RNA id: AMCG00004159


Basic Information

Item Value
RNA id AMCG00004159
length 4056
RNA type mRNA
GC content 0.42
exon number 12
gene id AMCG00004159
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36114501 ~ 36128960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGTGGGCAGGCTGTGCGGGAATTGCGCTTTCAATTGTGCGGAGGATTTGGTTCACATccatacatcaataaataaatgaaatgtgtgtatggAACCAGCTGCGTAGAGACATTGCAACACGGTGCACTAAATGAGAGTAACAAGAAGAAATGCGAAACGTAGCCTCTCAGAAGGGAGACTCAGCCCTGCACTGATGATGGAGCACAAAGTGAGGAGCCCGCCGGCCTCCAGTGTCTCCAGCAAGAGGAAGACTTCAAAGCCCAGACAAAAGGGCAAAACACAAGGTCTCAGGGGTTCCAGAGTGGCTTTGTCCCGGAGGAGCCCCCCGAGGACTCTGTGAGCGAGTCGCCCTGCTCCTCCATCACTTCCTCCAGCCAGGCCAATGGCACAGACGACACGGCCCAGCCCCTCAGGAAGTCGGCCTCTTGGTTGGAGACGAAGCGGGGAAAGCACTGCACAGaaccagagaaagagaaagGAAGTCAAGAGGAAAGATGGCACCTGCAGATTCTCGATAAAGGACGAGTGACATGTCCTAAGTGTAAAGCTGTTGTTAGGAAAACCGTTGAAGGGTTGAAGAAGCACATGACAAACTGCAAAATGaaTCCCTTTACATGTCAACACTGTGGAAAGCAGCTGAAATCTCTGACTGGGATGAAGTATCACGTCATGGCTGACCACAATAACTTGccAACATCTGACGATGCAAATGGATTGGACAACCACTCTCTTAAAGATAGATTAAGAAAGGTGCTGAAGAGAATGGGCAagttaaaatgcacaaaagagGGTTGTACAGGCAGTTTCACCAGCATCATGGGTTACTTGTACCACATGAGGAAGTGTGGCAAAGAAGAGTCAGAGCTGGAGAAACTTGTTCTGAACTGCAAGCACTGTGGAAAACCCTACAAGTCAAAGGCTGGTCTTGAGTACCACCTGAAATCTGAGCATGGCCCTACTCCCCTGAACAGTGAGGAGGAAGACGTGAAGGCACAGAGGGAGCCCAATCCAGAGAGGACAGCCTGTGGCCGGGTGAAGAGGAGGTCTGCCCAGGTGGCGGTGTTCCACCTGCAGGAGATTGCAAGCGAGGAGCTGCTGAAGGAGTGGCCTAAGAGGAAGGTGCAGCAGGACCTGGTGCCTGATGACAGGAAGTTAAAGTATGCCCGACCTGGGCTGCCAGCTTTCAGTCAAGAAGTCCTTCGGAAATGGAAGAATGAAGTGAAATTGCACAGAAAAGTGCATTGTCCTAATGAGGGCTGTAATTCAGTTTACACCAGTGTATCTGGACTGAAAGCCCACCTTGGGCTCTGTTCTAGGGGTGACTTTGAGGCAGGGAAGTATAAATGCTTGATATGTGATAAAGAATTCAGCTCAGAGAGTGGGGTGAAGTATCACATCAACTCCATTCATGCTCAGGACTGGTTTGTCGTGAGCTCAAAAACAAAGAGCTTTGAAAAGATGCTGAAGACTAAACCGAAGGAAGACAAAAGGCAGGCCCCTCCAGAGAAAAAGCCATCCCTCAGGTTCACCACAGCTCAGAAGCGGCGGCAGGAAAAGAAGCCTGTGCCAAGCTCCTCCGCTGGCCTGAGGATGAGGCGGGAGGCtctgcagaagaagaagaagcagaaggaaaaggagaaggaCTGCTATGACTTCAGTGGCAGTGACAGCcgcagtagcagcagcagctgtgggagcagcagcagcagcagcagcagcgactCTGAACAAGAGGAGCAAGAGGCTCCCAGACAGGACAAGTGGGCTCTGAAGAGGCCTGTCGCAAGGTCTGGGGCAGGCCAGCGAGCAAAATAAAGTCCTCTCTTGCCTTCAAAACAAGTCACCCTAGTGGCTACCACGTTTACAAGTCCGTAGATTTAGGTTGTCTTTTTAAAGCAACAgtaaacattgcttttttttttcttaaaaagggAAAGTATGAAATTTACCCGTTAACCCATTAGTTTAACCAATTTTAGTATTCTCATAACAGTGATGGAGCGATCACTGCTTTAGCtcttggtttttatttttgtgaataaaACGCACACGAAGTGTGTATAGCCCCAGAttagtttgctttgttttgttttgctagtTCTATCCAGTAACTTtcttgtacatttatttttttagacttGCAGTATCCAGGGTTCTCTCCTCTTCATCCTCACTAGTTCCATACCCAAATACCCAAAACCTTTCAGCTGTTTTGACAGTAATGTGTCTACATTTCAGTGACTTCTAAATACCAAGCAAAACTATTTGCTTCACTAGCCAAATGTATACTTATATCTTATTCACAGTCTGGCACCATGTGGGGATAGACATGATGCTGGAGGTCAATAAAGACGGGGTGTAGGACATACAGGTGCAAACATGGCGGAGATTTAGTGGAAGGAgagtgatttattatttacacagtGTTCCAgtgaacaaaccaaaaatacaaaaatcaaacccTAGCTCCTGTGAGCCTGAAATATGCATTTAACAGTTCCCTCTCTCAATAGGTGCTAATAACGACAAGATAAAAATGCAACTAGTTCAAGTCCATGATCAATGTTCTTGTCTTTCCACCCTTAAGCACTCTTTCTACACTCAGGCTCTTTTCCTGCCTCAAGGATCCAGGGAGGTATAACACAACCTAAGCTTCAGGACATTGATTGTTCAGGTGGTATAGCAAGGCTTAGTAACCAGTTGTGTGTGCCATCCACTGTGTGGGTTACAAAACCAAGCACGGGCCCACTCTTATGTCTGTACTCTATATAAATGGAATCGGCTGCTAACAAGATTTTAATCCAAGTTTTAAAGCATTATTCCCCTGCAGGTTCTGTCGATGAGGTAAAGCATAGTTAGTTTTCTATATggtgctgtattttattgtacctCCCCTGGCTTTTTAGAGTAACCATGAGTACATTTTGGTCATGTATTAAAAGTTTGAATGGTTTAATGTTTCCCCATTATGTTGGTGCCACCCATTTTAGcaagaaaatgaattgaaagAACCAGTTTACCAATATGTTACAtgcagagagaaggacagagatgCACAAAGGTAACactaaagttaaaacaaaagagttaaacatgtttttgtaattaaacagTCATGTTTATAACACCACATCAATCCTATAGAAAAACCAAAGTGCTGCGTGTCCTTGGAGAGAAACTGTGTACAGGCAGCTATTAGTTACTAGCTACACAATGTGTGGAGTAACTTAATATTTACCCTGTTTATATCATGTGGttgtccttttatttgttttgattactgaaatatttatcatAAACCTAAACAGTAtgtaatatgattttaaaaaaatgttttagccCTTTGAGTGTGTTACATGTGGTTTTCTACAATATCCTACCctattaggttttattttttttaattgtaatacttTGTTCTTGGTTTAACTCATCCAGTGTCTATGTTTCTCACAGAAATTAGTAACTGTCCTTTGTAatgatgtaattttgtttacaatatttatttatattatagaGCCCACTTGTGTGTTGCATTTAATCAGTGTTGTCTTTTCCCTGTTATTTGGTGCACAATAACAAACTCAATAACTACAAGGACTGTGAGTTGTAATACAAATGGAAGGATTTCCCTGTACTTTAACTGGTGCATTAATATTGTGCATGCAATACTCTAAATTGTGCTGCTGTCTGACTAAATAAGAAGTTATGAATGCTTTTAATATGGACCTTcaagtattaaatatttacctaatgagtataatacagtgtaacCAAACTCCTGCATTGTGTTCAAAGTAAAATGGTTAGTAGACTGTTTTTGGGCATCCCATGCTCTCACTTGTATTGCATATattgtacaacattttttttaaacctgtgttTTATAGTTTGTGTTTCAGGTTTTGAATACTAACCCTTAATATGCCACAGATTCTCTCAAGACTCTTGTTTATCTTTATTTGTTGGGTTTTATCTGTTATTGTGGCCTGATTAATCTTTTGGATTAAGTGGTGTCTCTCTATCTatgaatatacacaaacatacatccATA

Function

GO:

id name namespace
GO:0006913 nucleocytoplasmic transport biological_process
GO:0051169 nuclear transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7461 lncRNA upstream 69219 36027279 ~ 36045282 (+) True AMCG00004160
TU7448 lncRNA upstream 294018 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 647846 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 658614 35455676 ~ 35455887 (+) True G6002
TU7270 lncRNA upstream 807552 35301103 ~ 35306949 (+) True G5914
TU7487 lncRNA downstream 32646 36161606 ~ 36165870 (+) True G6102
TU7620 lncRNA downstream 366880 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 397708 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 424944 36553904 ~ 36555108 (+) True G6240
TU7640 lncRNA downstream 427146 36556106 ~ 36557331 (+) True G6242
AMCG00004161 mRNA upstream 40880 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004160 mRNA upstream 69219 36027281 ~ 36045282 (+) False AMCG00004160
AMCG00004163 mRNA upstream 276791 35835773 ~ 35837710 (+) True AMCG00004163
AMCG00004158 mRNA upstream 348321 35752450 ~ 35766180 (+) False AMCG00004158
AMCG00004157 mRNA upstream 430108 35642996 ~ 35684393 (+) True AMCG00004157
AMCG00004165 mRNA downstream 5046 36134006 ~ 36158549 (+) True AMCG00004165
AMCG00004164 mRNA downstream 58533 36187493 ~ 36211948 (+) True AMCG00004164
AMCG00004166 mRNA downstream 108846 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004167 mRNA downstream 132828 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004170 mRNA downstream 219613 36348573 ~ 36390512 (+) True AMCG00004170
TU7437 other upstream 348321 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1244181 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2983315 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5219674 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5842977 30271210 ~ 30271524 (+) True G5245
TU7524 other downstream 143232 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 645041 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 732587 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 870397 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5330616 41459576 ~ 41507231 (+) True G7094

Expression Profile