RNA id: AMCG00004163


Basic Information

Item Value
RNA id AMCG00004163
length 549
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00004163
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35835773 ~ 35837710 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGCCAAGAAGAGGTACCTGCTTGTGTCTCTAGGGGCCTGTCTTCTGCTGATTGCCTACCTTGGGGGATTGCAGATTGGAGAGttccagcaccagcaccagcacctcTATAAGGATTCCCAAAGCCAGAATCTGCACCGGCAGCACTGGCCACAGTGGATTAACCCTTTAAGCACCTACCTGGATGGGGACGAGCATGAGGAGGATGATCCTCGTCTCCATCAGCAGCACCCCTCCCCACGAGAGAGGCGCGAGATCAGGAACAACGTCTACAAAAGCAGGAAGTGCAGGATGGACACGTGTTTTGACTTCAGCCTCTGCCAAAGAGGTTTCAAGGTGTACATCTATCCCCTGCAGAAGGGAGAGAAGGTCTCGGAGAGCTACCAAAAAATCACCACAGCAATCGAGGAATCTCGATTTTACACCACTGACCCAAGTCGGGCTTGTCTGTTTGTCCTCAGCATTGACACACTGGACAGGGACCAGCTTTCTTTTCAAACCACTGAAACCAGTGAAACCAAACTGTACTGGACAGACATTTGCTAG

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7448 lncRNA upstream 15290 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 369118 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 379886 35455676 ~ 35455887 (+) True G6002
TU7229 lncRNA upstream 485746 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA upstream 528824 35301103 ~ 35306949 (+) True G5914
TU7461 lncRNA downstream 189569 36027279 ~ 36045282 (+) True AMCG00004160
TU7487 lncRNA downstream 323896 36161606 ~ 36165870 (+) True G6102
TU7620 lncRNA downstream 658130 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 688958 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 716194 36553904 ~ 36555108 (+) True G6240
AMCG00004158 mRNA upstream 69593 35752450 ~ 35766180 (+) False AMCG00004158
AMCG00004157 mRNA upstream 151380 35642996 ~ 35684393 (+) True AMCG00004157
AMCG00004151 mRNA upstream 376990 35457154 ~ 35458783 (+) True AMCG00004151
AMCG00004150 mRNA upstream 380251 35451071 ~ 35455522 (+) True AMCG00004150
AMCG00004145 mRNA upstream 428820 35398380 ~ 35406953 (+) True AMCG00004145
AMCG00004160 mRNA downstream 189571 36027281 ~ 36045282 (+) False AMCG00004160
AMCG00004161 mRNA downstream 229870 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004159 mRNA downstream 276791 36114501 ~ 36128960 (+) True AMCG00004159
AMCG00004165 mRNA downstream 296296 36134006 ~ 36158549 (+) True AMCG00004165
AMCG00004164 mRNA downstream 349783 36187493 ~ 36211948 (+) True AMCG00004164
TU7437 other upstream 69593 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 965453 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2704587 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 4940946 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5564249 30271210 ~ 30271524 (+) True G5245
TU7524 other downstream 434482 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 936291 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1023837 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 1161647 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5621866 41459576 ~ 41507231 (+) True G7094

Expression Profile