RNA id: AMCG00004164


Basic Information

Item Value
RNA id AMCG00004164
length 4119
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00004164
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36187493 ~ 36211948 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAACATGGCAGTGAATATGGACCAAGTGGCTGTTCAAGCACCGCACCAATGCGAAGTAGAAGAAGACCGCCCTATATTTAGGGCTGACAGTGGCAGTGGAGAGGATTCTTTAGACAGCCTCTTTCGCAGGTGtcccctcactccctctctgtctccacgCAAACGGACCACCAGCCAGAGCAAAACAGAGCCCCCTCTACTGAGGACCAACAAACGCACCATCTACACTGCAGGGAGACCGCCCTGGTACAATGTCACAGGAACCACCTTCAAGGAAGCCTTCGTtattgGGCTGTGTGGTGGCAGTGCTTCAGGAAAGACCACTGTGGCAAATAAGATTATAGAGGCCTTGGATGTGCCCTGGGTGGTGCTGCTGTCCATGGACTCTTTCTACAAGGTGCTGAGCAAAGACAAGCAGGAGTTGGCAGCCAAGAACGAGTACAACTTTGATCATCCAGATGCCTTTGACTTTGAGCTGCTAGTCACAGTGCTGAGAAAGCTAAAGAAAGGGAAGAGCATCAAAGTGCCTGTGTACGACTTCACCACACACAGCCGCCGCAAGGAATGGaaaaccGTCTACGGAGCCAATGTAGTAATATTTGAAGGAATTCTGGCTTTTGCAAACAAGGAACTTTTGAAGCTGCTGGATATGAAAGTGTTCGTGGACACAGACTCTGACATCCGGCTCGTTCGCCGCCTGAAGAGAGACATTTCAGAGCGAGGCCGGGACATCACAGGCGTCATCAAACAGTACAACAAGTTTGTGAAACCGAGCTTTGAGCAGTACATCGAACCCACAGTGCAGGTGGCCGACATTGTGGTCCCAAGGGGGGGAGAAAACTTTGTAGCCCTGGACCTCATTGTGCAGCATGTCCATAGTCAGCTGGAGAAGCGTGAAATCACAGTGAGAGCGGCTTTGGCGTCAGCACACCAAGGCCAGCCCCTGCCCAAGACCCTCAGTGTGATGGAGAGCACCCCTCAGGTCAGGGGCATGCACACCATCATcagGAATAAAGACACAAATCGGGatgaatttattttctactCAAAGAGATTAATGAGGCTTCTGATTGAGCATGCTCTCTCCTTCTTGCCTCTCAAGCCTGTGTCTGTGGAGACTCCACAGGGAACCACCTATGAAGGGAAGAGGCTCAGTGGCAAAAGGATAACGGGTGTTTCCATCCTGCGAGCCGGAGAGACGATGGAACAAGCACTCATGGCCGTGTGTAAAGACATCCGCCTGGGGAAGATACTGATACAAACCAATCACGACACTGGGGAGCCCGAGCTGCACTATCTTCGATTGCCTAAAGATATAAGTGAAGACTATGTAATTTTAATGGACAGCACTGTGTCTACTGGGGCTGCTGCTCTGATGGCTGTGAGAGTGTTACTAGACCACGATGTGCAGGAGGACAAGATCTTCCTGCTGTCTCTACTGATGGCAGAAATGGGCGTGCACTCGGTGGCCTACGCCTTTCCCAAGGTGCGCATCATCACCACTGCCGTGGACAAGAAGGTCAATGATGAATTCCACATCATCCCAGGGATAGGTAATTTTGGAGATCGTTACTTTGGCACAGACGCTCCCTCCGACTGGTATGAAAGTGATGAGGGAATGGACTACTGAACAGAGGGAGTGTGGCCCAATTACTGGCCGAGTAGAGCACTCTTCAGGAATGTCTGACATTCCTTCAGCACAagagtgtaaaaaaaaaaaaaaatgttgcttcaTGTCTGTAAAAGTTACTGCGTGCCATGTCTGGTGGTTTGTTACAATACTTATTGGAGATATATAGactttaaaactgaatttcCCTCTCTAAGGTCTAAAATACCTCCAAGACTCCTTCGCTCACTTGCAGTTTTCTCCGTGTTTTTTGGACTAAGGACATCCACTTGTGCATCATCCACAACTGCTACCCCAGAcccatgctttaaaatgtattggaatgCATTGCACTTCTGTAAAACATCTGCACTTCCCAAAGCCCAGCACCCAACTGTGAACACCAGTCTCCACATTGTATACTGAGATTCGGAAGTAGTATATCTTGGGTGGAGGCCTTTCTTTAGTTTCTTCATATTGGGACTTTTGGCTTGACAAGTGTTGCAGAGGGCACTGCAAAACAGAACATGGGTTTATGCTTGCCTTTtagaaagaaacacagaagGTCTATATTGGCTGCTGGGAGGTAGGGTTTCAGTTTTGTGCAGCACAGTTCTTGCCAACCTGATTCACAGTTCATATCCTGTCTTTAACATTCCCAGATAATACCTGTGGAAATATTGTTCACATGAATAAGTATAAATACTGTTCCTCTGTGTCCTGTGGGATATGAAAATCCATGTCCAGTGTCTTTAAAATTGATTAGACAGATATGACATTGAAAGGCAGAATTGCAGGGTTTCAAACACTTGTATCCTTATTTGCCTTATTATTTGATGTTACTTTGGACACtgatctatttttttcttttttttttcccaggacTGCAATTAATTGTAATGTGATCTTCGGTTCATTATAATCTGTGATCTGAGTTTACAATAGATGCACAGCTACTGCTACATATAGCtgacagtaaattaaatatatggaaTATTTTATGGAAGCCACCTTCCTAAAGGTTCCTGCCACATTTCACAGTTAACATTTCCCACATTGTAATGCAAAATTCAGTGTTTAAACTAATCTTTTCTTTTATCACAGCTGAAGTGAACATTGCAAATATACTTACTAGATAATTTACTGCCATTGTCAGCTACTTCTTGGATATATACTTGAATGatacttgtttttgttatttaatgtctttaaattttgtttaaagtaaattgtcttaaaaagacacattatttatctttaaaacgTTTTAGAATCTGTTTACAAGCTCTTCACTATTCAAATGTGTATATTCTAAACTATGTACGACATTATGTAATGGAGCTATCAAGTCTGTCAGTTCATACCTATACCTTTCTCTGTATGATCTGCTTTCCATTAAATGTGTAACACTTTAGATATTAAAAGTCAGCATACCTGTTTTGGAGACATTCAACATCAGcaacaaatgttacaaaatactTGAAGCATTGTACATGGTTGCATGTCATTCATCCCCCAATATGTTCATGCAATTGGCTTTTCAAGTTGTaacaggaaatgtaaaacaagaaaGGTATGTAGAAAATGATATATGCGTAAAGCATGAATAAAACATCCTTCAATTATAAGAAGGGGTTCATGAACCTAGGGTGGTTAGCAAGACTGGAATTGTAAGGGAGTGCATTTTTTAACTGTCCTGGAATAGAGGCCGTGCAGAATACAACCCTTTCCTGGTTTATTGTCTTTAGTTTTGGTGTtagatgttaattaaaaaatatggtGAATTTTGACTCTTTAACACAGGAAACCAAAGATTTAGATTTACTGGAAATAGAATATACTGTAAGAGCCTGTTCACTTTCTTTACAAGTGATATGgatataatatttacaaaaggGACACAGTAAATATAGCTTATGAAGGCACATTTCTGACCAAACGAACGTGGCTATCTTCCATTTATAGAGGGGTTATGCAGTACTGCTTAAAACACCTTTAAGAAACATTCAGTTTAACCTTAAAATTAGCTGTCTCATCTTTCTAGGTGACAGATTCCTTTAATGTTTCTCTTGTGTGCCAAGAGATCCATTTTCCAATCAAgccaatagaaaaacaaactattagTTCTTggcattttgattttataaatcCCTGGCAGTGTAGTCATGAAACAATGATATGGATATAGATTGTTATAATCATCTACACAAACTATGGCCccttcaaattaaattactctcgggtggtggggggcaggcctcatttgtaatgctttgttaTGTACTGTGTTCTGCATTTGACCAAATGAAAATGGATCAACAACCATCAATGACAGACCTCTGTCCTCTCATGCCATTAGGCTTGGTTACTGATTTTATCTCCCTTATGTATAACTTACATCTCTGGTTGAATGctcctttatttctttaaaattattttgttgttggttatgtttttatttgtatcctGTTCtcgtttaattaaaaataaaaatgactgaaGGTATTT

Function

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7487 lncRNA upstream 21623 36161606 ~ 36165870 (+) True G6102
TU7461 lncRNA upstream 142211 36027279 ~ 36045282 (+) True AMCG00004160
TU7448 lncRNA upstream 367010 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 720838 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 731606 35455676 ~ 35455887 (+) True G6002
TU7620 lncRNA downstream 283892 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 314720 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 341956 36553904 ~ 36555108 (+) True G6240
TU7640 lncRNA downstream 344158 36556106 ~ 36557331 (+) True G6242
TU7645 lncRNA downstream 353622 36565570 ~ 36593153 (+) True G6247
AMCG00004165 mRNA upstream 28944 36134006 ~ 36158549 (+) True AMCG00004165
AMCG00004159 mRNA upstream 58533 36114501 ~ 36128960 (+) True AMCG00004159
AMCG00004161 mRNA upstream 113872 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004160 mRNA upstream 142211 36027281 ~ 36045282 (+) False AMCG00004160
AMCG00004163 mRNA upstream 349783 35835773 ~ 35837710 (+) True AMCG00004163
AMCG00004166 mRNA downstream 25858 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004167 mRNA downstream 49840 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004170 mRNA downstream 136625 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004173 mRNA downstream 243043 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004174 mRNA downstream 289878 36501826 ~ 36502116 (+) True AMCG00004174
TU7437 other upstream 421313 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1317173 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3056307 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5292666 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5915969 30271210 ~ 30271524 (+) True G5245
TU7524 other downstream 60244 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 562053 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 649599 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 787409 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5247628 41459576 ~ 41507231 (+) True G7094

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01699880_01719696.mRNA True 3696 mRNA 0.41 14 CI01000029 1699666 ~ 1721489 (+)