RNA id: AMCG00004165


Basic Information

Item Value
RNA id AMCG00004165
length 3265
RNA type mRNA
GC content 0.51
exon number 18
gene id AMCG00004165
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36134006 ~ 36158549 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caTAGCTGCTGTGTCAGGTGGATGTGCATGTTTTCAGCTCATGTTAAACCTTCAGAAAATCATTAAGATGTATTTGTCTTATCCAGATATAATGCTGTAGGACGTTTCTTCTGTGGACGTACTGTGTACTACTTGACTGCCAGGGAAAGGGACGAGGGAACTTAATGGCAGCTGCTGCCCAGGAGGAGTGCAGAAGCAACGCTATGGGTGTGCCTTCAGAACTCAACCTCCAGGGACAGTCTGCCACTGAGCAAGCAGGCCCGGCCCGCAGTGAGTGCCCAAAGAAGAGTGACCGAGCCCCAGGAACGGACGCACACAGTTCAGCCTTCCTGGAGTCAGGAGAAGAGAAGCCAATGAGTGAAGGGATGTCACAGGAGGACCGCACAAGCGTTGACCTGCCAGTTGAGAATGGCACAGGAGACAGCACTCAGTATCGTGAAGAGTCAGCGGACTGCTCTGGACAGCAACAGAACAAGAAGGAAGGTTCCTGCCAGATAGAAGACAGCCAGCAGTTGGTCCCTGAAGACACCCCTGTTGAAGACTCCTCTTCTGCTACCCCACAGTCAACAAAGCTTAGCAGATCAAGAAAGAACCCTCTGCCCAAGAAACTGCTCACTCCACCCCAGGCATCAGGCCCACAAGCCAAACAGACCACAAAGACCCCCCAGCCGGCGAAGGAATGCAAGAAGAGAGGCAGAAGGACTAAGGCAGAGCTGCTTGCACTGCAGCTTCACACATCGCTGACCAGCACCCCAACACCAGCAGAAAAGAAAGACCTGGATGATATCATCAGTGATGAGACGACCCCAGGCGGCAGGCCCAAGAGGAGAGCAGCCAAGGTCGCTTTGCAGTACCTGCACAACCTGGCTGAGGAGATGGGTGGCCCCACCTGGTCTGAGAAAACTTCGGATCCAGCAGAGCCAGACTCGGGCAAGGGCCAGAAACGCGGGAGGGGGAAGAAGAGGAAGACCCTGGATTATGACAGCTCCGACGACGTAAGCAAGGATGCCGATTTCGTTCTTCCAAACACTCAGGAGATGGACATAGAATCGGAGGACGAAGAAGACATGGAGGGCTTTGCCACTGAGGTGCCAGAAAAGGGTTTCCGACCACGGAGCACAGCCGCTGCTAATAAACCCAAATATTTTGGCATGGCTGCAAACGGTTTGCCTAACAATGTGATGGGACCTGTGTGGAATTGCACTCATGTCACTAAAGAGTTCCGTGAACAACACTGTGCCTCTTGGGCTTTTCCTGAATGGATTCCTTCTGTAAAGGACTGGATTTTTTTGTCCTCCAGTGAGAGTGAGAAGTATTTACCCAAAGAGGAAACATCTCCACCCTTCAGGATAGAACGAGAGGGTGTTAGTGAAGAAGACAACCTCCACAGAATAAAAAGATTTGAATCCCTGTCCTCCCACCATGAGCGCTGGGACCTGACGTTTTTTGTTGGCGGTCCTGTGTGGTCTATGGAGTGGAGCCCCTGCCAGGAAGGCTCGTCTGCCAGCCAGTATGCAGCCATATACAGCAACAGGGGAATGGATGATAGACACAGGCTTGCGGGTACCCACTCTGAGGCGGCGCTGCTACAGATCTGGCATGTGGGTGAGCTACAGCATGATACATGCCCCAGGACCAAAGCATCCTTTGCATACGGAATTGCCTTGGACTATGGCTGTATATGGGATATGAAGTGGTGTCCAAGCGGAGCATGGGAACTGCCCTCAACTAACAGGAAGGTTCCTCAGCTGCCAAGGCTTGGGCTGCTTGCTGCCGCTTTTTCTAATGGAAAAATTGCTGTGTTCAGCCTTCCACACCCAGAGGCCTTGGCTGCTTACAGAAAAACTCACAGGAAAGGAGCAGTAAAAGAAGAACCTCTGATTTGCCAGGTGCGCTGCACTGCTGTTTTGAAAGTGGGGTCGATACAAGCTGGCAATAGCTCCCAGTGTGGGCAGTGCTTCAGTCTGGACTGGCTACCAATGAAACCACATAACACCTTGGCGGCTGGTTTCTACGATGGCACGGTGGCCTTGTGGAACCTGGAAACCAAATCTTTGCTACAGCGAGTGCGCCTGGCTAATGGCAGTTTAACCCTGTATCCATATCACTGCTTTATAGCTCATGACCATGCGGTCCGCGTGCTTACCTGGTGTAAGGCCAGCAGTAATTTAATAGTCACTTCCAGCGAGGACAGGAAGGTGAAATTCTGGGATCTCCGGAGGACTTACGAGCCAGTTAATGTCATCAAACGCTACCTCACCACCGAGATCTCATGGCTGCTGCACTGGTCcggagtgtgtgtgtcacaggaGAACTGTTACGCTACATTCGGGCAAAATGGCATCCATTACCTGGACGCTGGTTACTTCGGATTTAAGCCGTATTTTGTTGCTCCAAGGAGAGGAACAGTGTGGAGCATATCAGGCTCAGACTGGCTGAATACCTGCGTGACAGGAGACACTACGGGGGAGCTGATCATGATGGTGCTCTCAGACATGACTCTGAACCCCAACAACATCAAGCGGCCCATGGACCGCAGATTTCCTGTCTGCAGAGCCGAACTTGTTCAGTACGAAACGGATTCAAAAGCACAAGACACGGACACTGATGATTCCAGACTTAAAGCAGATATTAGGGAGCCCCGGACATACagtgaagcaattaaaaaatactaccTCCTGTTTCACGATACAGATATGAGGACCTTTAAGAATGCCCTCAAGCGAGATCCCATGAAGCACATGTACGCCACAGAAACCAAAGGTGCTCTGCCTCTTGACAGGATGCCTCTTGACTCCTTGCATAAGGTCCGTTTCAACCCCAACCTAGGATCGCACAGCTGGGTCCTATCAGCTGGGCAGGCCGGCATCGTCCGAGCGCACTGCCTGAGAGGGATGAACAGTCCTGTCGTCAGCAAACTGGTGCATGAGAGCCAAGCGCAGTTCAACACCATGTATCAACCTCAGGGAGCCACGGCCAACGAGAGCACGGTCACGGCGGTGAACCGCAGTCTGGTGGGAATCATGGAGGTGCAGTGACGTGGCCCTGGGGGACCGCTTTAACGGCCCTCTGGGACTATAGTACTGCAAGACTGAGGGAAGCCAGAGTACCTGAAGAAATAGAGAACCagggatttgtttatttttttaagaaatgccTTCCCTCATGAGATGCATCCCATAATGTCTGGATTCTAGTATAGTTGACGGTCTCATTAAATCGTCACCCGTTTTAAttattgtagttttgtttttatatttaaatt

Function

GO: NA

KEGG:

id description
K15200 GTF3C2; general transcription factor 3C polypeptide 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7461 lncRNA upstream 88724 36027279 ~ 36045282 (+) True AMCG00004160
TU7448 lncRNA upstream 313523 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 667351 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 678119 35455676 ~ 35455887 (+) True G6002
TU7270 lncRNA upstream 827057 35301103 ~ 35306949 (+) True G5914
TU7487 lncRNA downstream 3057 36161606 ~ 36165870 (+) True G6102
TU7620 lncRNA downstream 337291 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 368119 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 395355 36553904 ~ 36555108 (+) True G6240
TU7640 lncRNA downstream 397557 36556106 ~ 36557331 (+) True G6242
AMCG00004159 mRNA upstream 5046 36114501 ~ 36128960 (+) True AMCG00004159
AMCG00004161 mRNA upstream 60385 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004160 mRNA upstream 88724 36027281 ~ 36045282 (+) False AMCG00004160
AMCG00004163 mRNA upstream 296296 35835773 ~ 35837710 (+) True AMCG00004163
AMCG00004158 mRNA upstream 367826 35752450 ~ 35766180 (+) False AMCG00004158
AMCG00004164 mRNA downstream 28944 36187493 ~ 36211948 (+) True AMCG00004164
AMCG00004166 mRNA downstream 79257 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004167 mRNA downstream 103239 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004170 mRNA downstream 190024 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004173 mRNA downstream 296442 36454991 ~ 36469024 (+) True AMCG00004173
TU7437 other upstream 367826 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1263686 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3002820 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5239179 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5862482 30271210 ~ 30271524 (+) True G5245
TU7524 other downstream 113643 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 615452 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 702998 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 840808 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5301027 41459576 ~ 41507231 (+) True G7094

Expression Profile