RNA id: TU7524



Basic Information


Item Value
RNA id TU7524
length 888
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00004167
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36261788 ~ 36278234 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ggtgttcctaataatcctttaggtgagtgtatatataggaCACCCTCCTGTATTCAAAAGTGTGTAAATCATGCTGATATGAGCACATAGGGAAAACTCAGCATGTATGTAATATGTGTGAAAATTTTGATTATGCTGCAAAAGTGTgtgaacaaatatttgaatttgaagaCTAAGATCATAGAAATCTAGGAAACTCCAAATGTATACACaccaaaaatgtaacaaatgtgtttgttttaagagaTATGGGTTGGTAAGAAGCTGATTATAactaactgtaaaataattatattgtttcttaTCTTCCACAGGGCAACAAAGAATTGATCAAAAAGATCATAGACACTGCCAAGGCATCCAACATAGAGCGCACGGAGCCTGGGTACGAGAACATGGACCACTTCATCATCAACACTGACGACATCGCCGACATGCTGAGAACAATAGATTTCCAAACAGTCTCCCAGGGTGACGCCGCCGAGGAGGGCTTTGAAGCTGAGGAGGGTGGGGTGGCAGAAGACGAGGTGTCCCAGCTGAGCGTCGAGGGCGACGGCAGCAGACTGGATACAGCCGGGCTCCTCTCTGGTAAGAGAACTGTCCCAGCTGCCAAAAAATAAAGCCAGGCACCCACTCTCCCCACAGCAAATCAAATCACGGTGATTGACAAGAGCACACCCACAACTTGCTCCAGAAGTTTCCTGAAGGATGTCAAATTAAAAGTTGAGAGTGACGTCATTTTCCAGGTAATCACAGAAGAGCTGCAATGCTGTCTGCTTCCTTTCTCTTCTGATAAAATTCTGTGAAGCTCCTCTTACTGATATTACTGTACCAAAACTTTTATGTGGCACGTCACTTATCAAATCTGTGggtaataaaagtaaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7487 lncRNA upstream 106322 36161606 ~ 36165870 (+) True G6102
TU7461 lncRNA upstream 226910 36027279 ~ 36045282 (+) True AMCG00004160
TU7448 lncRNA upstream 451709 35820255 ~ 35820483 (+) True G6067
TU7383 lncRNA upstream 805537 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 816305 35455676 ~ 35455887 (+) True G6002
TU7620 lncRNA downstream 220910 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 251738 36526668 ~ 36539067 (+) True G6225
TU7638 lncRNA downstream 278974 36553904 ~ 36555108 (+) True G6240
TU7640 lncRNA downstream 281176 36556106 ~ 36557331 (+) True G6242
TU7645 lncRNA downstream 290640 36565570 ~ 36593153 (+) True G6247
AMCG00004166 mRNA upstream 19294 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004164 mRNA upstream 60244 36187493 ~ 36211948 (+) True AMCG00004164
AMCG00004165 mRNA upstream 113643 36134006 ~ 36158549 (+) True AMCG00004165
AMCG00004159 mRNA upstream 143232 36114501 ~ 36128960 (+) True AMCG00004159
AMCG00004161 mRNA upstream 198571 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004170 mRNA downstream 73643 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004173 mRNA downstream 180061 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004174 mRNA downstream 226896 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004176 mRNA downstream 388872 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004179 mRNA downstream 414450 36689380 ~ 36690284 (+) False AMCG00004179
TU7437 other upstream 506012 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1401872 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3141006 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5377365 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 6000668 30271210 ~ 30271524 (+) True G5245
TU7741 other downstream 499071 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 586617 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 724427 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5184646 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5937580 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile