RNA id: AMCG00004179


Basic Information

Item Value
RNA id AMCG00004179
length 378
RNA type mRNA
GC content 0.57
exon number 2
gene id AMCG00004179
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36687630 ~ 36697885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGCCCGTAGGCAGCGGTGGATCTTCTCGTCTGGTGCAGTATGTGGTGGTTCGAGCAGACCTGGTGAGGACCTTGGCCTGGCCCTTGGGTGCCGTTATCACGCAGGCTTGCCATGCAGCAACCGCTGCTATTCACTTGAACTACAACGACCAGGACACGCAGCAGTACCTGGCCGAACTGGACAGCATGCACAAAGTGGTGCTGGAGGCTCCAGATGAAGCCTCTCTCTCAAGCCTGTCAGAAACACTGAGCCAGAAGGGCGTGGCTCACAAATTATGGGTGGAGCAGCCAGAGGACACGCCCACTTGCCTGGCCCTGAAGCCCTACCCTAAAGAAACGGTGCAGCCTCTACTGCGCAAATTCAAACTGTTT

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004045 aminoacyl-tRNA hydrolase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7650 lncRNA upstream 45678 36639660 ~ 36643702 (+) True G6252
TU7645 lncRNA upstream 96227 36565570 ~ 36593153 (+) True G6247
TU7640 lncRNA upstream 132049 36556106 ~ 36557331 (+) True G6242
TU7638 lncRNA upstream 134272 36553904 ~ 36555108 (+) True G6240
TU7622 lncRNA upstream 150313 36526668 ~ 36539067 (+) True G6225
TU7680 lncRNA downstream 7812 36698096 ~ 36698298 (+) True G6271
TU7681 lncRNA downstream 8631 36698915 ~ 36700145 (+) True G6272
TU7682 lncRNA downstream 10803 36701087 ~ 36701451 (+) True G6273
TU7683 lncRNA downstream 11929 36702213 ~ 36702449 (+) True G6274
TU7684 lncRNA downstream 12421 36702705 ~ 36702968 (+) True G6275
AMCG00004176 mRNA upstream 19732 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004174 mRNA upstream 187264 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004173 mRNA upstream 220356 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004170 mRNA upstream 298868 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004167 mRNA upstream 411146 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004180 mRNA downstream 52343 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004186 mRNA downstream 58572 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004187 mRNA downstream 100150 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004192 mRNA downstream 194074 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004191 mRNA downstream 222362 36912646 ~ 36918990 (+) True AMCG00004191
TU7524 other upstream 414450 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 923200 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1819060 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3558194 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5794553 30887995 ~ 30894827 (+) True AMCG00004056
TU7741 other downstream 83717 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 171263 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 309073 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4769292 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5522226 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile