RNA id: TU7678


Basic Information

Item Value
RNA id TU7678
length 2804
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00004179
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36687630 ~ 36697885 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacacacacacacacacacacacacacaccctcaaaGTAGGACAATTTACAGGACTGACTTATTTTTTCAGGTAGAATTATCAATAAAACAGGACTTCTTTCTAACCAAGGTCTCCCTGTGAACCAATGAGTTCCTCCCAGAGGTAACTCAATACTGGAATTTAATTcctcaaataaacacacacacacacatacatacatacatacacacacaccacacacagtaTAAACTATACACAAGGTGACCAGCAAATAAAACACTGTCAGACTGTTGTTAAAACTGAAGAGGACAAGTTTGATAATATGCATAGGATTCCTATAACAGGGCTGTTCGATAATTCAAACAATAGACTAGAATTTAAATTGATGCTGGTATAAAATGTCATTATGACAATAACTGATCCTATTCACCTCAGTCTTTGGTCAAGCATTTATTAATATGTTGACATGTTAACAGTAGATCCTCACATGCAGCCACCACCTGACCAATCTCTCTGGAAACTGATTGTCTATGGTCAATCCTCACAGGAAAACAGTGCAGGCCAGGAAGTGagttaatgaaatgcatgtAGCAGCACAAAAATGTAGAAATGCAGCTTTCAACAGAGAGCGACATCACACACCGACACTGGCTGAACTGTGTGTGTTAAATCATTACCTGGAGGGGGATTCCTCAGTCCAAGCACACGTTCTGGCAGTTTAGTACCAGTAACTGCAACACTGGTTGTCTGCTCTTTCACCCGTTGACAGAAACAAGGCTTCTGCGCCTCCAGTAAGACTCGAACCTGGGGAGCCACCACTCGTGCTCCCTTTGTTCTTACTATTATCGATGATCTTGGAATAGCACTTCATCAGGGTTCGTGGTAGCAGTAGCTGTAGCTTTTTCCCTGCATGGTTACCATTCTGCCACACAGTAAAAACAGGACCAACCCTTTATTGCCCAAAGGCATACGTCACTCTGTGTCAATATCAGTTTCATTTGTATATCATCTTTCATGTACCCTCCAGTTTCCATAAGGCTCTGACAATGTTGCACAATTTTATAATCACCCCGCATATACACAGTGAGACCTCCGAGAAAATAAGCTATTTGGACCATAAAATTCtccttttttaataatatttctttAAACAGAGCTATTCTGATACCAGAGTATAGCTGAAAGAATTAGGCTCTtgatttcctttatattttcacaattaGATGAATCTTATCTAACAATATACTGTACCTCCCCACTGCCATTATTGCTTGCTATTAGCATCATTTTTTGTTGCTCTTTTTTCTCGAAATGATACTTGTCGTCCAGTAACATTACCGATAGTGTTACAACAGCACCAACCCAGGTTAGTGCTGAACAGTGTCAGACTCACAGCATGCACATGAGTAACAGTCCACAAGCTGTGCAGCAGAGCAGGATGGGACTGTATTGTAGTTAGTTTCAATGTGCCAACTGTGGGGATGAGCAAAGCATTTGTATTTCCAGTACTCCTTTAAAATGTTGACTAGTATCagtaaattaattgtaattcaaaacagaagatgtttttgtgtgtccTAAATCCGTTATTGTGttgctgtttaattaattgtgtctACAAGATcatatattggaaaaaaaaagagaactgcAAAGCTAGCCTGACCAAAATTAAACTCCCAACTTCCAAACAATCATTTCTCcttcacattaaattaaaagataGCGAGTTTTCCAAGTCCACATTTCGCTGGCTCACATTTTTATAGGTGTATACTCTGCTGATGCCAAAAGTTGTCTCtgagaacaataaaacaatgacagATACCAATTCGCAAATTATACAATGCAAACTCCTTATCCTGCTTCAAATCCCAAGATATCTGTGAGTTTTACTTCAGAATGACTgtttccttaaaataataaaattttAAAGGATAGAAGAAACTTTTCGCTCATCCCAGTCTAGTCTGTCTGTTCTATACAATACTTTCATTCTGCACGGTACACATGGCAAAAACACTGATAGGCCAAAGAGAACCATTCCTGGCTCAGAGTATTCACAGCTGTTAGAAAAAGATCTGTGTAGGACATTTGTTgtctattatttataaaaccgTTCCCCAAAGAAAAGCCTGTGGCGGACAGTGTGCTAAGTCTCTCTTCCTGGTGATTCTTGTTCCAATTGACtgactgagagagaaaaaaaaaaaccaagagCATCCTCCCACCAGGCACTGCAGTGGAAAGCCAGTCAGTGACAGATCCAGCTGAAACTGAACTATCCTtgcacaacagaaaaaaaaaaagcattcccAAAGTGTTGTCCCGTCACATCGCTGCTCCGATTGGCAAAGAAGCCAAGCTCTGCAGTTACATTCAGTCAAGCACCAGATCCTCCAAACTGCCTGATGAATGCAGCCCAACCAGAAAGCAGGTCCTCCTTTACTTGGCAAATCTGGAACGTGGTCCTCCAAACACCCAACCAGGAAGCAGATTTTCAGAGTAAGCAACCAGGAATGAGCACTCTGCCAACAGACTGAGATATTCAATCACCCCTTCACCGCCCCCCAAAATAGTCTTGaggaaatttaaaaacaaaattgtgaaaaatataaatctctcTTTGTGAAAAGCTCAGCTCCACCTAGGGTGTCATTCAGTTAACAGCTGCTGAAGGAGGCTTTTCTGCTGTGATTGGGTGGTCTGGGTGCCAGTCCCCCCCTTCTGTGATCCCATTGGGCCAGATTGGTTCAAGTAGGGGTCTCCGCCAACCAAGTTAACGGTACATTGGACATCGGCGAAAACTTGAACCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7650 lncRNA upstream 43928 36639660 ~ 36643702 (+) True G6252
TU7645 lncRNA upstream 94477 36565570 ~ 36593153 (+) True G6247
TU7640 lncRNA upstream 130299 36556106 ~ 36557331 (+) True G6242
TU7638 lncRNA upstream 132522 36553904 ~ 36555108 (+) True G6240
TU7622 lncRNA upstream 148563 36526668 ~ 36539067 (+) True G6225
TU7680 lncRNA downstream 211 36698096 ~ 36698298 (+) True G6271
TU7681 lncRNA downstream 1030 36698915 ~ 36700145 (+) True G6272
TU7682 lncRNA downstream 3202 36701087 ~ 36701451 (+) True G6273
TU7683 lncRNA downstream 4328 36702213 ~ 36702449 (+) True G6274
TU7684 lncRNA downstream 4820 36702705 ~ 36702968 (+) True G6275
AMCG00004176 mRNA upstream 17982 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004174 mRNA upstream 185514 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004173 mRNA upstream 218606 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004170 mRNA upstream 297118 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004167 mRNA upstream 409396 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004180 mRNA downstream 44742 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004186 mRNA downstream 50971 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004187 mRNA downstream 92549 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004192 mRNA downstream 186473 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004191 mRNA downstream 214761 36912646 ~ 36918990 (+) True AMCG00004191
TU7524 other upstream 412700 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 921450 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1817310 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3556444 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5792803 30887995 ~ 30894827 (+) True AMCG00004056
TU7741 other downstream 76116 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 163662 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 301472 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4761691 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5514625 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile