RNA id: AMCG00004186


Basic Information

Item Value
RNA id AMCG00004186
length 6154
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00004186
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36748856 ~ 36765206 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGCTAGCGCCAGCACCGCGCAGACCGTCAGTCCACACAGTCGCTGCAGAACTACGGCAGGGTACCACCCAGCCCGTATCCTGGGCCTGAGACCCTGATGAGAGATCTGTGGAGCTGTCCCTGAGTGTTTGTGAGGCAGGCTGCCCTGCAGAGGGTGCCCTGGGCCCTGGCAGCCATGGTGGAGATGAAATTCTCCCTGGTGGACTATGTGATTTTTGCACTACTGCTCCTGCTGTCCACGGGGATCGGGCTGTTTTATGCCTTCTCGGGGGGGCGCCAGCGCACCACACAAGAGTTCCTGCTGGCGGACCGCAGTATGAGCTGCCTCCCCGTCGCCCTCTCCCTGCTAGCCACCTTCCAGTCCGCGGTGGCCATCTTGGGTGTGCCTGCGGAGATCTACTCCGGGGGGACACAGTACTGGTTCCTGGGCACCTCTTATGTGCTGGGGCTGCTGATTCCTGCTCACATCTTCATCCCAGTCTTTTACCGTCTGCGTCTCACCAGCGCATACCAGtaTCTGGAGCTGCGTTTCGGCAAAACCGTAAAGATCTGTGGGACTGTGACCTTTATCTTTCAGATGGTGATCTATATGGGTGTGGTGCTGTATGCTCCTGCTCTGGCTCTCAATGCAGTTACGGGATTTGACCTTTGGGGGGCAGTGATGGCCATTGGGCTCGTCTGTACCATTTACACAACACTGGGCGGGTTGAAAGCAGTGATTTGGACAGACGTGTTCCAGACGGTGGTGATGTTCGTGGGGCAGCTGGCGGTGATCGTGGTGGGGGCGCACCAGGCTGGGGGCATGGCTGCTGTGTGGCAGAAAGCACAAGAGGGCGGCCGCATCTCTGGGCTGGACCTGAACCCGGACCCTTTTGAGCGGCACACTTTCTGGACGCTGGGCCTGGGGGGGGTGTTCATGATGCTGGCTCTGTACGGAGTGAACCAGGCACAGGTCCAGAGATACCTCAGCTCCCGCACCGAGAAGGAGGCCATCATgtccTGCTACATGGTTTTCCCCTGCCAGCAGATTGTGCTGACTCTGGGCTGTTTGATGGGGCTGGTGATGTTTGCCCGTTATGGTGAGGACAGCCCCCTGAAAAATGGATACGTTAAATCGGCAGACCAGATGGTGCTCTACTTTGTGATGGATGTGCTTAAGGACCTTCCTGGACTGCCAGGACTGTTTGTAGCTTGTCTGTTCAGTGGAGCTCTCAGCACAATTTCCTCAGCCTTTAATTCTCTGGCCACTGTGACGCTGGAGGACCTGATCAAGCCCTACTTCCCAGACATGCCCGAGTCCAGGGCCACTTTGCTGTCAAAAGGCCTCGCTCTGGGCTATGGGCTTGTCTGCTTGGGAATGGCCTACATAGCATCACTGATGGGCTCAGTACTGCAGGCAGCACTCAGCATCTTCGGGATGGTTGGGGGTCCCCTCCTCGGGGTCTTCTGTCTGGGAATGTTCTTCCCCTGGGCTAACTCCACTGGTGCTCTCACTGGCTTGCTGGCAGGCTTAGTCATGGCTTTCTGGATTGGGATAGGGAGCATAGTCTCTCGCATGGGTGCCTCTGCCCCTCTGCCACATCTCAACACCACCGCTGTCCCAAACACCGGGAACATGACCACTGTGGCCATGACGACACTAATCACTGCCATCACTTCAAGGCCCACAGGACTGCAGCGCTTCTACTCGCTGTCGTACATGTGGTACAGTGCGCACAACTCCACCACGGTGGTTGTGGTGGGGCTGATAGTCAGTCTCCTTACAGGTCCCACCAAGGAGAAGGATGTAACCCCGGGCACAGTGTTCCCTGTGCTGGGCACACTCCTGTTCTTCCTGCCAGAGCGATACAGAGAGAAGCTGTGCTGCGTCACTCCACTGGACTACAGGcCCAAGGAGCCTGGTGCCCAGCAGCGCCTCATGCCACACAAGGAGAGCAATGGCAGCACGTTCCCCACCGaggagggaaagggggaggaCGAGGAGTCGGAGAGCCCCCCAGTCGTGAACCGCTACATTCACATTGTGCACGAGACGTCCCTGTGACCCAGCCCTGCGCCTCCCTGGCCGGCCCTCTCGCAGACTGTGGCGGGAGACTGGAAAAGACACAGCCGTGCATGGTGGGGCGATACCCAAATGTAGTGCTTAGGTTTCCAGCAGGGATACTCAAACAGCCGGGGAAAATTGAGCTTGTGTGTCAGATGAGTAGGGTGAGAACGACTACACGTGAATCAGGATTTTTACCGTGTCAGATACAGTCCAAGTAAGGCAGTTGGTGTCCTGTACCGACTTCCTCAGaggaggattttgtttttcaaggttTAGCTGTAGTGCTTTATTCTGCAATACACTGGCCATGAAGGCCTGAAGGATCATGATTCATGAAGAACAGTTGTTTACTCCCTTTTATATGACACAAACTCCTGCCGTGCTGTTTTGTTCAAAGCATCCCATTTAGAAGTGGCTTTAAAATTCCACATATACAAACATCCCTTTAATcccagctttttattttctggcaaGGAAAATTTAGGAGACTGcctaattaaaacagatttttattaaaattttataaggcaaacagaaaatgcattataGACACATTTTTGTATGGCATTGTTCAGGTGATTGTGATATACACACCAAATGTTAATTCCATTTCCATTGCcatggaaaatattttgattcCAAATATTTAGAAGTAGTTAACACACGACCTGTTTCCTGTGCTGTCCATGGCACGGTGAGTCACAAGACCACTTATGGGTTTGTTCTGCCTTTATAAGCTGGGGTGATGCCAAACCCACTTCTAAGTATTTTATCCACTGCCATTGTATACCATGAGACCTTTATcaacatttaacacacacacctttcAAGCAGACATTATTGGATAGTCCTAGCAGACACTAGTTTCAAACTCCCAGGCAGGTTCTGTAAAAGTTTCAGCCACattagatttttaaattttagttttgttttttgttagctTTGAGCTTCTTGAATGACCAAAAGCATCTTGAAGGATTACCGTGTAACATCTTCAAAGAAGTGGGTCGGTAGCTTGACGTGTACCAATAATCCATTGTGCTGAGAAGTGCCTCCTACTCCCAGTCCTGAATGTGTTGTCTCTTAATGTCCATTGGTGTCTTCTGCTCTTGGTTTATAAGCCGAATCTGAAGAAATGTTTTAGGCTCTCGGGGTTTCCCGCAGCTCTATTAATCGGTCCTGCCTGGCCACACAAATTtaagtgtgaaaaaacaaacaaaaccaaaaaagttTGAAATGCAAGCGCTCTTGCTTTTGCTCCACCCCCTGCTCTCCTTCACTACGGTAAAACCACCCCCGTAGATTAttaatctacacacacacacagtcttctCCCCCGTCAGCAAATCTGAAACAGTCTGCCATGCCTATGCAAAATTCTGCGGGAAACCCTGTCTACAACGTTGTCTTTTTTGGCATgaaattcaaacacacaaacctttGTCTTGTCTATTGGGAACaggatatcttttttttttttggcgaATTAGTTAGATAATTTGACAGATGACCCTAACAGCAACAGTAAAATAATCTTCGCTGTACTCCTGTATCACTAAGCCTCTGCAGAAGTGTGGCCTTTACGATTGGTAGTAAAAATGTGTGCACTATCCTTTCATATTCCTGATCTTGCTCCAGAGCTCATCTCAAGaagtgcgtgtcagtgtggacGTGTGTTTGCGTTACTCCTGCGCTTCTGAGTTCATTGCATATCGTTCAATTCAGATCagttgttttactgatcttattCTGGGATATTTATTATTGTGGAGATGGTTTGATTTGGATCGAAGGCCCAATAGAGGCATTTTTCCTCTATGGGTTGGTCCCCATGTAGTGTGACTGTGCTGTTGGCTTTGTTGTTTATTGGTGTCCTACACTGGATTGGTGGTGTGTGTTCCagtactgtgtgtttgtgttggtgcTCTGTGACTTGCTTTGTTTGTTATCCAGACCCTGTTCCCCAAGCTTTCTGTACTTCCTGCTTAAAAATATCCAAAACAATTCCTACAGTAAAGCTTTCCTCCAATACTCACAGCAGAGTAAAGAAGAATGAAAAGGCATGAATAGCAAAATGTCACAATTACAGATGGCTATGGCTGTGCTGGGTCCACCTGCACTGAGTCTGTCTGTTCTTTTCTGATTTGACACATTTCAATTGAACAGTTTCTTGAATCACAGGTTATGCTCTGCTGTGTATAATCTTGTGCTTTCTGTGCCAAAGGAATTGCCAGTAAAAAAATGACCAGCTATTGTCATCTTGTACACCTCATCTCATTTCACTTAAATCTTTTAAATCCCATCAGATATCAATTGGTTGTTTTAACTTCTAATAAGCAGGGGAGAAattatgtactttttatttaagcCTAAGTGAAGTTCCTGATGTTTTGTCTGTTTACAATGTGTGTCTACCTTGGATAtctcaagaaaacaaatgtgaaagGCACCTGCCtaaatttgttttcatcaggGGCACTCTGGAGACCATACATGCATCAGGAccttcatttaaaattgtaacctttaattgaaatgtcttgAAGGAGAAATTACTTGGGAAGGCTGAACTCAACAGACCCCTACAGTCAACATATGTAATGAGAACTAATGTTTTTCTTAACCTAATGAAAATGCTGATATCtgctttatgttttatattgaatagAATAAGTATTTACTGCTGGAAGAAAGGACcagttttataaattatttcgTTTTCCTTTGTACCTGAGATGACTTGAAGAGTTAAGATAATTTGCCCAGTGAacagttttcaattattatCATTGTGAACATAGGTaggtgtacattttttttatataatacaatctaAGCACAGTGGCTttgaatcatttcaaatgttcagaaagtgtcTGATATTTGCACTAGGGAAAGGTACTACAGAACGCCAAGGCAAGGCTGCCGTGCGGTGTATGCCTGCATAGAGCTTAAGGTAAGAGGCAAGAGAAAGAAGTCTCGCATGCATAAGCAAATGCATTCAATGAAGGTTGATATGTATCAGTGTGTATGctatctgtgtatatatgtatgattgtaaagcatttcataaattcataaaatgcatatttaagaGCTCATGGGGATGCATACTATAGCAAGGGCGATTTATGAACTGCTCCCTGTGACTGCCCGTTCCGAGAGTCCCGTCAGCCAGCGTCTTAACACCCATCGGTTACCATTTGAAAGCGCTACGAAACCAAGGCTCCCTCCTACTACGCATTCCCACAACAACTGTGCGGTAGCTTTGCTTAGTTCTTGTCCTGCATGCTGCACAAGTGCCTCTGTTTGACTGTGCTGCTTTGTAGTCGAATGAAAGCCTTTTTTTCCAGATCTAGCTGAATTCTGAGCTCTATTATTCCAGTTGTGAGCTGCAGGGCTCCTCCTGGGGAGCAGGTTTGAGCTGCTGTGCTCACCCTCAGCTTGAAGTGTATGACTGGATTTCATTATTGCTGTGGTACAGCAGCTAATGTGACATTGAGAGACCCAATACTCTGGCTCATTCCACATAGTCAACCAGTGAGAATTGTGCTGTATAATATGCGCTAATCAGTATGCCAAATTCATGACTAAACTTATTCCCCTTCAACTTCAACCTAActtgcttttaaaaagtaagAGATCAGTATGTGTGAGTACTTATGTTTCTAAAGATATGgtctaataaaatgttttgtctgtctgtttccaatctttgtttcctgttttttgtctttgttcaatttcccattttcattaaattcatatattttttttttttcatctttgaaATCTCACATTTGTATTAGATCATTGCACCACTATTAACTCTGATGCAAAATCGGCTGCTTTTATAGTTGACGATTGAGATTAATTGCAAAGCCAATCTGCATATTGATGCCACACTTTAatcattcattttagttttaaacacCTCAGTTTTTTCAAAATCTAATCAAAATGTACTTTACATTCCTGACCTACATTTAAAGGTGAATTCAATTTAATAACTTACGAAATTCCATTGGACGATGGACGTACAGTATATTCCTACAGTACAAACAGTATTGCAGCGAATGTCCTGTGCTATATTTTCTGAATTGGG

Function

GO: NA

KEGG:

id description
K14386 SLC5A6, SMVT; solute carrier family 5 (sodium-dependent multivitamin transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7686 lncRNA upstream 41421 36705670 ~ 36707435 (+) True G6277
TU7685 lncRNA upstream 44097 36704508 ~ 36704759 (+) True G6276
TU7684 lncRNA upstream 45888 36702705 ~ 36702968 (+) True G6275
TU7683 lncRNA upstream 46407 36702213 ~ 36702449 (+) True G6274
TU7682 lncRNA upstream 47405 36701087 ~ 36701451 (+) True G6273
TU7737 lncRNA downstream 2531 36767737 ~ 36768023 (+) True G6310
TU7742 lncRNA downstream 9779 36774985 ~ 36776982 (+) True G6315
TU7743 lncRNA downstream 11923 36777129 ~ 36777523 (+) True G6316
TU7744 lncRNA downstream 12728 36777934 ~ 36778165 (+) True G6317
TU7745 lncRNA downstream 13162 36778368 ~ 36778577 (+) True G6318
AMCG00004180 mRNA upstream 2791 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004179 mRNA upstream 58572 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004176 mRNA upstream 79208 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004174 mRNA upstream 246740 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004173 mRNA upstream 279832 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004187 mRNA downstream 25228 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004192 mRNA downstream 119152 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004191 mRNA downstream 147440 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004190 mRNA downstream 171698 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004193 mRNA downstream 433717 37198923 ~ 37231208 (+) True AMCG00004193
TU7524 other upstream 473926 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 982676 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1878536 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3617670 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5854029 30887995 ~ 30894827 (+) True AMCG00004056
TU7741 other downstream 8795 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 96341 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 234151 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4694370 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5447304 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035953 True 2320 mRNA 0.49 16 NC_007131.7 36646761 ~ 36671660 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_00653876_00662303.mRNA True 2711 mRNA 0.47 15 CI01000029 653614 ~ 662874 (-)