RNA id: AMCG00004190


Basic Information

Item Value
RNA id AMCG00004190
length 1668
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00004190
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36936904 ~ 36939547 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGGTGCTCATTCTCACAAGTAGATACAAGGCAGTGAAACTGATACACCTTTATACAAGCAACACAGATTCCGCAGAAAAGCCAGTGCTCAGTTTGAGAAGGAATCGGAAATCGCTGATATCACATCTTTGATAAACTTTGCAGTTTTCACGGAAAATGCTGTTACCGATTGTGCTGGTGATGTGCATTGCCTGTGTGTCTGAGGGTGCAGACAGATGTCCAGGTGCATGTGAATGCTCTCACAGGGTCAGTGCTGAGAGAACAGAGATGGACTGCCACAAGAGAGGGCTGACTTCTATCCCACCAAATCTACCCCACGATTCATGGATCCTCAAAAtggGTGAAAACCTTTTACAAGACCTACCAGCAAATGCTATAAAATCAATCCCAAAACTTGAAAGTATAAATCTAGAACTCAATGCAATCCAAGCAATCCATCCTCTGGCTTTTTCAGGGGCCAGGAGGCTCATGCTATTGAACTTGTATGGCAACCAGATATCAAAACTACCTCTGAAAGGCTTCCAAGAGCTCATCAATCTGCGCTTCCTCATGCTGGGACAGAACCACATTACTACACTCAAACCTGGATTGTTTGTTGGCCTCAGGAATCTCTCAGACTTGGATCTACCGGTAAACTCCCTCACCACCATTCCCCCAAATGTATTCAAGCCCCTAACAGCATTAAAGGTCTTGGATCTGGCCTTCAACAAGATTGGGGTAGTTTCTCCCAAAGCTTTCATTGGTCTGGGAGAGGTCCAGTTTCTCAACCTGGATAACAACAACATCAGGAACCTCTCGGCTGGGACCTTGAGACCTTTGATCAAACTGGAAATGCTGGTGTTGGACAACAATCAGATTTCAACAGTGACTGCTGCAATGTTTGAGGGCTTATCCGAAATGCAAGAGCTGTACATGAGAAATAATGAAATTGACATTCTGCCTGAAGATGTATTCAAACACATGCCCAAGCTCACACAGGTTGCACTAAGTGGAAACAGGCTGAAGACTATTGAAGGCAATTTACTTACTAAGCTGCCAGACCTTAAAGATGTATACCTGCACGATAACCCTTGGGCATGTGACTGCAACATGAAGTCTTTTGTTGACTGGATGACCCAGACCACAGCCAATCTATCGCCGTTTGAAGCTCTGAAGTGCACAACTCCCCCAGAACACAAGGACAAAACCCTCAGCTCACTCAAAGCTGAGCATTTAAAATGCAAGGTGTGAAACCAACAGGAACATGTGAACTTTCACTTGTATATGACTGCAGTGTAGTTTGGTTTTCCTTTCTATATGTATAAGAAGTACCAATCTGGGAAATCATCAATCAGGGTATTGAAGGATAATTTAGAagcttaaaattaattatttgattcttcccttgaaaatgtttttgtaattcataGGATTAATCCTTGAACAGAATATCAAGAAGAAATGCTGTATTGAGGAATACTGCCTGCACTGCTTTGACAGGAGTCTTCCCCTTGTCACCCAGCTGTTCCTTAAACCTCCATTCTACAGGCTCCTGGAAAGCCTTGCTGTTATCTGTTTGTTGGTATTTACCCAAAACATGGTCTATCAGGGGTGCCATTTATTAGGTCCTAAAATGCAGCTGccattcacaaaaataaataaactgtagtaaAAATTGTTACCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7748 lncRNA upstream 154674 36782012 ~ 36782230 (+) True G6321
TU7747 lncRNA upstream 155487 36780561 ~ 36781417 (+) True G6320
TU7746 lncRNA upstream 157754 36778880 ~ 36779150 (+) True G6319
TU7745 lncRNA upstream 158327 36778368 ~ 36778577 (+) True G6318
TU7744 lncRNA upstream 158739 36777934 ~ 36778165 (+) True G6317
TU7820 lncRNA downstream 88492 37028039 ~ 37028246 (+) True G6383
TU7844 lncRNA downstream 218629 37158176 ~ 37265504 (+) True G6405
TU7861 lncRNA downstream 376098 37315645 ~ 37318146 (+) True G6421
TU7870 lncRNA downstream 397979 37337526 ~ 37341014 (+) True G6427
TU7873 lncRNA downstream 404514 37344061 ~ 37344445 (+) True G6428
AMCG00004191 mRNA upstream 17914 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004192 mRNA upstream 32810 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004187 mRNA upstream 63035 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004186 mRNA upstream 171698 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004180 mRNA upstream 190839 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004193 mRNA downstream 259376 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004197 mRNA downstream 454555 37394102 ~ 37417947 (+) True AMCG00004197
AMCG00004199 mRNA downstream 487902 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004206 mRNA downstream 536742 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004205 mRNA downstream 539283 37478830 ~ 37485632 (+) True AMCG00004205
TU7756 other upstream 45158 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 162381 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 661974 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1170724 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 2066584 34852863 ~ 34870320 (+) True AMCG00004138
TU7800 other downstream 59810 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4520029 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5272963 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5749232 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 9022463 45962010 ~ 45968306 (+) True AMCG00004380

Expression Profile