RNA id: AMCG00004191


Basic Information

Item Value
RNA id AMCG00004191
length 1794
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00004191
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36912646 ~ 36918990 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGAGCAACAGGTTTCCGAGTGGGGAGATGGTGATGGGGCGCTGGCCTGGCAGCAGTCTGTATTATGAAGTGAAGGTCATGAATTATGATGCAGCCACTGAGCTCTacacagtgaagtacaaggatGGTACTGAACTGGAACTGAGGGAGTCTGACATTCGGCGCTCCCGTTCGAACTCGCCTTCCAGGCGGCGCAGTCGCTCCCGCTCCCCTGGCAGGTCCACACGCCGCACCTCGTCACGCGGCAGAGACTCGCGCAAGGAGACCAAGACACAGGAGATCCTTGAAGTAAAGCTGTCTCCTGTGtCAAAGCCTGTTGTGAACAATAGCAATAACCAGCATGACAAGAAAGAGGGAAATGACACTTCTCACGAAGTCACATCTCACAAGcaaaaGGTGGACTCGGAGTGGGAGAGGAACCCTATGGAGGTACGTTACAACCTGCGCCCCAGGAAGGAGGAGCCTGTCGTCAGTGTGGCAGAGCCTGGGGACTTCAAGAAGAAGGTGCAGGACATTGTTTGGACAGCTCCAAAACCCAGAGTGCCCCAGACTACTGAGTTGGAGTTCGGGGGAAAGATAGGGGCCTTCTTCATGCTGTTCCTTCTCCCAGCCACTGTCTTTGCTCTCCTGTTGATATGCAATCGGGAAGATGCCAGTATACTGAACTTTCCCCCTGTCCTCCCTGCTATTGACACCTTATGGGACAACCAGGTGTTTGGTATGGTAGTGCTCTGGTTCCTCTTTCAAGCATTGCTCTACCTGCTGCCGATTGGGAAGGTTGCTGAAGGATTGCCCCTAAGCAGTGGAAAAAGGTTAAAATACAGGATTAATGGTTTTTATGCACTTGTCCTCAGTGTGGCAGTGCTGGGAGCAGCAGTGTACTACAAGGTAGACTTGAGCTACATCCACGAGCACTTCCTGCAGTTTGCAGTGTCGGCAatggctctctctctcctcctgagTGTGTATCTGTACACACGCTCTCGCTGGGCACACAATGATGAGCTTGCCCCTGGCGGAAACACTGGTAACCTGATTTATGATTTCTTCATTGGACGTGAACTTAATCCAAGAATTAAAATCTTTGATCTTAAATACTTCTGTGAGCTGCGTCCAGGTTTGATTGGATGGATTGTGATTAACTTCGCAATGCTCCTTGCTGAAATGAAACTGCAGAAGCTTGAGTGTCCCTCTGTGGCCATGATACTGGTTAACAGTTTCCAGCTGCTGTATGTCTTGGATGCTCTTTGGAATGAGGAAGCAATTTTGACCACAATGGATATTGTCCATGATGGCTTTGGATTCATGCTGACTTTTGGAGATTTGGTTTGGGTGCCCTTTACCTACAGCATGCAGGCGTTTTACCTGGTCAGCCACCCCAACACGCTGTCCTGGCCACTGGTGGCAGCCATTGTTACTCTGAACTTAATTGGATACCTAGTGTTCCGTAAAGCCAACTCGCAGAAAAATGCCTTCAGGAGGGACCCTCGTGACCCTAAAGTGGCCCacCTGAAGACCATCCCTACAGCGACAGGGAAGAGCCTGCTGGTGTCTGGACTGTGGGGCGTTGTCCGTCACCCAAACTACCTGGGTGACATCATCATGGCTCTGGCGTGGTCCCTGCCCTGCGGTTTTAACCACATTTTACCATACTTCTACGTGATTTACTTCACTTGCTTACTGATTCACCGCGAGGCTCGTGATGAGCACCAGTGCCGAAAGAAGTACGGATCCGCGTGGGACGAGTACTGCCGACAAGTGCGCTTCCGCATATTCCCCGGAGTCTACTGA

Function

GO: NA

KEGG:

id description
K19532 LBR; Delta14-sterol reductase (lamin-B receptor)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7748 lncRNA upstream 130416 36782012 ~ 36782230 (+) True G6321
TU7747 lncRNA upstream 131229 36780561 ~ 36781417 (+) True G6320
TU7746 lncRNA upstream 133496 36778880 ~ 36779150 (+) True G6319
TU7745 lncRNA upstream 134069 36778368 ~ 36778577 (+) True G6318
TU7744 lncRNA upstream 134481 36777934 ~ 36778165 (+) True G6317
TU7820 lncRNA downstream 109049 37028039 ~ 37028246 (+) True G6383
TU7844 lncRNA downstream 239186 37158176 ~ 37265504 (+) True G6405
TU7861 lncRNA downstream 396655 37315645 ~ 37318146 (+) True G6421
TU7870 lncRNA downstream 418536 37337526 ~ 37341014 (+) True G6427
TU7873 lncRNA downstream 425071 37344061 ~ 37344445 (+) True G6428
AMCG00004192 mRNA upstream 8552 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004187 mRNA upstream 38777 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004186 mRNA upstream 147440 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004180 mRNA upstream 166581 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004179 mRNA upstream 222362 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004190 mRNA downstream 17914 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004193 mRNA downstream 279933 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004197 mRNA downstream 475112 37394102 ~ 37417947 (+) True AMCG00004197
AMCG00004199 mRNA downstream 508459 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004206 mRNA downstream 557299 37476289 ~ 37478687 (+) True AMCG00004206
TU7756 other upstream 20900 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 138123 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 637716 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1146466 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 2042326 34852863 ~ 34870320 (+) True AMCG00004138
TU7800 other downstream 80367 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4540586 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5293520 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5769789 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 9043020 45962010 ~ 45968306 (+) True AMCG00004380

Expression Profile