RNA id: AMCG00004197


Basic Information

Item Value
RNA id AMCG00004197
length 4350
RNA type mRNA
GC content 0.45
exon number 6
gene id AMCG00004197
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37394102 ~ 37417947 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCAAGTTTTTTGTGCTTAACACGCTGTTCGTGTTCTTCAGTGATGTTTCTGCTCAAGTGGAGCAGACGCCCAGTGCGGCTGAAGACTCTATCCCTGCAGGGAAGTACCTTCACACCGACCAGAGCACAGGGACCACGCTGATCTGTGACAAGTGCCCTGCCGGGACCTATGTCTCCAAGCACTGCACAGAGGCCAACCTGAGGGACTGCAGCCCCTGTCGGAATGGAACCTACACCACACATGAGAACGGGATCGAGAGGTGCCACCCCTGCAGGAAGCCCTGCCGAGCGCCCTTCACGGAGAAGACGCCCTGCTCTGCCTTGTCCAACCGCGAGTGCACTTGCCCCCCTCACTTTTTCAGAGAGAAGGACACCTGTAGGCCCCACTCGCAGTGCCCAAGAGGCTACGGTGTGAAGAAGAAAGGCAGTGCGGTGGAAGACGTGAAGTGTCGGCAGTGCTCCCGGGGCACCTTCTCCGACATGTCTTCTAGCGTGTTGAAGTGCAGGACTCACACGAACTGCACAGCACAGGGTCTGAGAATCGTGTCCCTCGGGACCAAGGAGTCGGACAATAGCTGCGGCCCTTCTTATACACACGCCCTCACCTCTGCAGCTCCAGCGAGCTCTGCTTTTGTGGAGGCCTTCTCTGCTTACTTTGCACAGAAAGATATCTTTAACTCAACAGTAGGTGCCCACACCAGTGCGTCAGAAGCCAGCACAGTGACAGAACCAACTGACACGCTGGTGGTCACCACAGAGAGTGCCTCTGACCATGGGGGGTCCCTTGCCACAGAGCACCACAAAGCGACCCAGCCACCACAGAAGCAACACAAGCACCTCTGGGACCACCACACGCACCACTCTGCCACCAAGACCCAGTCAGTGATGGACACCTTGTCTGACAGCAAGGTACCCAACCCTGGGTACAAGCCCACCAGGAGGGGGTCTCCCAGACCCAGTGTGCACAAAAACTTTGACATCAACGAGCACCTGCCTTGGATGATCGTCCTCTTCCTTCTGCTGATGCTGGTCGTGATTGTGAGCTGCAGTGTGAAGAGGAGCTCCAGGGTGCTGAAGAAGGGGCCCAGGCAGGATCCCAACAGCATTGTTGAGAAGGCTATCCAGAAAAAGCCAGTTACACAAGTTCAGAACAAGGAGAAGTGGATATACTATTCCAATGGACAAGGCGTGGATATCCTTAAGCTGGTGTCGGCACAAATCGGAAGCCAGTGGATAGAGATGTACCAGTACCTTGCCAATGCAACTGAGCGTGAGGTGGCAGCTTTCGCCAACGGGTACACGGCAGACCACGAGCGGGCCTATGCTGCTCTGCAGCACTGGACCATCCGAGATGCCGATGCCAACCTCGCCAAGCTCATCAACGCTCTCCGAAGACACAGGCGCAATGATGTGGTGGAAAAGATCCGGGTCGTAATGGAAGATAATCCTCAGtttgatCTGAACCAGCTGATGACCTCTGTGAATGTAACTCAATGCCTCAGCCCTACCCACAAGCCTTTAGAGTCCCCAGGAGTCATCGTGGAGCACTCCCCAGTGGATAGGACCAAGGGATTCTTCCCAGACGAGTCAGAACCACTTCTGCGCTGTGATTCCACCTCCAGCAACAACTCAGCCCTCAGCAGAACAGGCTCTTTTATTACCAAAGAAAAAAAGGACACTGTACTGCGCCAAGTCCGCCTGGACCCATGTGACCTACAGCCCATCTTCGACGACATGTTGCACATTTTAAACCCTGAGGAGCTGCACGTAATCGAGGAGACTCCCTCAGCTGAGGACAAGCTGGATAAACTCTTTGAGATTGCTGGTGTCAAAAGCCAGGAGGCCAGCCAGAAGCTGCTGGACTCCGTTTACAGCCACCTGCCTGACCTCCTGTAGTCACATGGCCAGGGATTGCATTTACTTCATGTATCACAAGCTGGCAAGGGCCGtgagaagcagagagaataatgCTGCATGTACAGTAAAGCCTGGAACATGTGACATGCGCTGAGGCCAGACAGTTTTGTCTGTAACAGTTGCTTCCCACCgtgcacattaaaatacatcttgCACTTGCGTAAATGTAGCTTTGAAAAGGTGTTCTCTTATGTTTTGGAGCTTCTTGTTAGTATTACTGTTCATAGGGAAACGTCAGAATTTACAAATGATGTATGTTACCGTTAAACACTAAtgatatgtaatataatttatgcactaattttataaaaatggCAGTCAGCCAAACCTGCTTCAATGGCCTACGTTTTTTGAAGTGCTGTTTGCTAATGTCATGTCTGTtctttttgtaatgcatttttttattactgcagtttttatgttttacatcaGCAATGTGTATGATCATGTAATGGGCATTTGAGATGATCACTGCTTGGGTTAGTAATCTAATGTAACATTGCAGAGGGTTTGCATTCAACATATACTACTTGAATTAGATGGCACACTTGTGTTTTtagttactttatttttaaaatagtgcTCACCTGATAGACCCTACCTTAGGCACCAAAACATACTTCAtattcaaaacacaaagaagaTTTTGCCGGACAGTGACTGAGGATTCACCGTGTCTGTTTAATCTGTAAGGCCAGTAATATATCAAGCTACCCTGGTGCTAGACTTGAAATACCCTGGTGGTGCTGGTTTAATGTAACAGTCTGAGAAAGTTATTCATGGTGTTATTAAGCCAGCCTCAACGGCCCGAACGAATTGCTTCTGAAACTGGATTTCTATGGAATTCACAGAAGAATGATGGAGATCTGCCTTCTAGCCTGTTACTAATCTATTGAAGTGTTTCTTACCAAGAATTGCTGATGTTTGCACCATATATTCTGGTGGCTGTTTTAATACTTAACACCTGTATATGATAATTGTACAATTATTGTAACATGTACATCAACCAATTAAAGTTCCAACTTTTGTCATAACTGTGTTCACTTGTCATAGATCTGTCTAGATGTCTTGCTGATTTACTCATAGGAGTTGGTCATACTTGTATCATACTGGTTATTTACAGACATAAATGACTCAGTGGGACTTAATGTCAAAtgattttgttccattttaacTTTTTGACATTATAAACAACTTGGtagattaacaaataaataatgtaatttcagtCTAATACTACAAATAGCCCTAAACATATCCTTATCATTGTAACTTTAACTTGAGTCTTAATCATAGCCTTAATGATAACTCTGACATCATACTTAATTATAAGCTCAAAAAGGTACATTTGCACAATATTTTTGGCATCTTTTCCTATGGTTTTCCCATGCACATGCCACACAGTTATGTGTTACCATGGTGTCCCCCTCATGGTTTTCCTCATTAGTCACAATTATCTTAGCAGAGTTCTATTGTGATGTAGTACTCTGGGATTTGCTTTTACCCCagatgtataatgtatttaacatgatgataatgtgtttaatatacTAGTGTATTTGCCCCCCAAAATTGTTTGAGGACAGTGTAAGGGACATAATGTGGCCGTGTTTAGACCTGTCATGTCTTGCACCtgtctgttttaaaattaagtgAGATATCGATGGAGCACAGAGTCCAACAGTGCTGTTTGTGAACACTAGAGGGGACCTGAGGGTTCTTGTCTTTTGTTGCTAAACTGCTTTGCTAATGTGAAATAGTGTAAGAGTGTTTGATATACTTTGGGTAGAGATAAGAGTATACAAATATCTGCCACTGATTGGCGGTGTGTCCTGTGCGGGTGACTTTGGTAACAGTGCACACAAGAAACTCAACATAAGGGACTTTGCTTTGCCTCCTTGCAGAGCTGTGTTTGATCTCCCTCGCCAATAATATTGCTTGTTTCATTAATTAAGGTGTGAACTAATTTATGAGAGCTGATTTTAACCTTCCACACAATACAACTCCGtgattttttattacatttttacacagtGGGGAGGGGGAAGGGCTACTGTGGGGATACACTGGCCCAGCCTAGTCCAGGAGTCAACGAGGTGCATTTATTAAACTTCCAAGTTACTGGCATATTGTGAGATGTGCTAAGCACAtattatgtgttgttgttttatttatggtaTTCATCACTAAGGTATTGGGGGGGGCATGTTTTGTGTGGTTGAAAaggtttctgttttgatttttgatatttaattattttttttgtaaaaccctTTTGCGCAAAACAGTTCTGTCACACGTGCTGGCCCCGCTGCCCTGTGTATAGAAATGGTTGTATGTGTCACACTGTGGTTGTGTTATTCATatggtgtattttaatttcgtcattgatgttttattttttatgccaATAAAGATGGTTGactttta

Function

GO: NA

KEGG:

id description
K05157 TNFRSF21, DR6, CD358; tumor necrosis factor receptor superfamily member 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7873 lncRNA upstream 49657 37344061 ~ 37344445 (+) True G6428
TU7870 lncRNA upstream 53088 37337526 ~ 37341014 (+) True G6427
TU7861 lncRNA upstream 75956 37315645 ~ 37318146 (+) True G6421
TU7844 lncRNA upstream 128598 37158176 ~ 37265504 (+) True G6405
TU7820 lncRNA upstream 365856 37028039 ~ 37028246 (+) True G6383
TU7929 lncRNA downstream 96935 37514882 ~ 37516498 (+) True G6471
TU7999 lncRNA downstream 426562 37844509 ~ 37847720 (+) True AMCG00004210
TU8059 lncRNA downstream 837282 38255229 ~ 38255483 (+) True G6573
TU8071 lncRNA downstream 998651 38416598 ~ 38418776 (+) True G6585
TU8073 lncRNA downstream 1048449 38466396 ~ 38466643 (+) True G6586
AMCG00004193 mRNA upstream 162894 37198923 ~ 37231208 (+) True AMCG00004193
AMCG00004190 mRNA upstream 454555 36936904 ~ 36939547 (+) True AMCG00004190
AMCG00004191 mRNA upstream 475112 36912646 ~ 36918990 (+) True AMCG00004191
AMCG00004192 mRNA upstream 490008 36884358 ~ 36904094 (+) True AMCG00004192
AMCG00004187 mRNA upstream 520233 36790434 ~ 36873869 (+) True AMCG00004187
AMCG00004199 mRNA downstream 9502 37427449 ~ 37445287 (+) True AMCG00004199
AMCG00004206 mRNA downstream 58342 37476289 ~ 37478687 (+) True AMCG00004206
AMCG00004205 mRNA downstream 60883 37478830 ~ 37485632 (+) True AMCG00004205
AMCG00004198 mRNA downstream 111815 37529762 ~ 37545788 (+) True AMCG00004198
AMCG00004209 mRNA downstream 149386 37567333 ~ 37570266 (+) True AMCG00004209
TU7800 other upstream 393944 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 502356 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 619579 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 1119172 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 1627922 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 4041629 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 4794563 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 5270832 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 8544063 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 10728941 48146888 ~ 48147156 (+) True G7999

Expression Profile