RNA id: AMCG00004223


Basic Information

Item Value
RNA id AMCG00004223
length 3018
RNA type mRNA
GC content 0.47
exon number 19
gene id AMCG00004223
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38840016 ~ 38850011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAGCAGCAGAGCGCAGACTTCTGATCATAAGCGGAACCGGTAGTGACGCAGTTCACGCGGCAAACCCGAAAATGTCAACATAAGCTCGTGAGAGTCACTGCAGgatCTGAATGGGAGGCTCAATAAAATGAGTGGAGACTGGCGAGGCAGGGGGTCCTGGAAGGGAGGGGGACAGAGAGTCTGGAGACGTGGTGGAGGGGACAGTAGGGGTGGCTCTGGAGGCTGGAGAGGTGGGAGAGGAAATGGGGGCTGGAGGCCAGGGGGCAGTTCCTGGAGGGGCTCTACCCCAAGAGGCAGAGCTGAAGGAGaTGGAGGATTTGGAACACCAGCTATTCGGCCTCGGATGACACAGACAAGGCTGGACCAGGTTAGCCAATACAAAGGCTGGAAACTTTACTTCTCTGAAGGTTACAGTGAGAGTTCTCCATATGTTCAAAAGATTCGGGCATTTGAAAATTACTTCATGAACAGAATTGATCTTTATGACAAGGATGAAATTGAAAGGAAAGGCAGCATAATGGTGGATTATAAAGATCTTTTACAGGATAAAAATCTCTCGGACGCAATACCTGATTTTGCAGCAGAGTTCAGAGACATGCCAGAAAAGATACTGGACTGTTTGGGAATGGCCATACACCAGGTTTTAACAAAAGATCTGGAGACGCATGCAGCAGAACTGCAGCAACAGGCAGGTCTTCCCAGTGGTGCCCCACCTATTGTCAACATGCCGTACATCCATGCCAGagTTTACAACTATGAACCACTGACCCCATTGAAAAACCTCAGGGCAAACTTTTACGGGAAGTACGTAGCCCTTCGAGGAACTGTGGTTAGAGTCAGTAATATCAAACCGCTTTGCACAAAGATGGCTTTCACCTGCAACACGTGTGGAGATACACAGAGCTTTCCCCTCCCTGATGGCAAATTCATGACACCTAACAAGtgTCTGCAGCCAGAATGCCGTAGTCGATCATTCACACCAAACAGAAGTTCACCTTTAACACTAACTGTGGACTGGCAGACTATTaaGGTTCAGGAGCTGATTTTGGATGACCAGAGGGAAGCTGGTCGAATTCCCCGGACCATTGAGTGTGAACTTTCGCAGGACTTGGTGGACAGTAGTGTCCCGGGAGACATGGTGACCATCACAGGGGTTGCTAAGGTGTGCAGTGAAGAGGGAAGTGGAAGgaacaaaaaagataaatgcatGTTTCTGCTGTACATTGAAGCGAACTCCATCAGCAACTCCAAAGGCCAGAAAGCAAAAGACATTGCAGGGTCTCGGAGCCAGGGGGCATCGCTAGAATTTTCTCTCAAAGACCTCTATGCCATTCAAGAGATTCAAGCCGAAGAACACCTGCTGAAATTAATTGTCAActCACTTTGCCCAGCTATCTATGGGCATGTGCTGGTGAAAGCAGGGTTAGTCCTGGCTTTGTTTGGGGGCTGTCAGAAGTTTGTGGATGACAAGAACCGCATACCGATAAGAGGAGACCCTCACATTCTTGTGGTGGGAGACCCAGGTCTGGGTAAAAGTCAGATGTTACAGGCTGTGTGTAACATTGCTCCACGGGGGGTCTATGTGTGTGGAAATACAACCACCACGTCTGGTCTGACTGTCACTCTCTCCCGGGACGGTGGGTCAGGAGATTATGCATTAGAAGCGGGAGCGCTGGTACTTGGAGATCAAGGCATCTGCTGTATTGATGAGTTTGATAAGATGGGGAACCAGCACCAAGCCCTGCTGGAAGCCATGGAGCAGCAGAGTATCAGCCTCGCCAAGGCTGGGATTGTCTGCACCTTACCAGCAAGAACCTCCATCATTGCAGCTGCAAACCCTGTGGGAGGACACTACAATAAAGCCAAGACTGTCTCGGAGAACTTGAAGATGGGGAGTGCTTTGCTAtccagatttgatttggtcttcaTTCTGTTAGACACCCCAAACGAAGATCACGATCACATGCTGTCTGAGCACGTCATGGCCATGCGCTCAGGGAAAAAAGGCTTCTTCACCAGTGCCACTGTCACCAGGAACAGCACGCAGGATCCCAACACTTCCATCTTGGAATTGCACTCTGATAAACCTCTGTCTGAGAGGTTGAAGGTTCTACCTGGAGAAAGCTTTGATCCCATTCCTCCGCAGCTGTTGAGGAAGTACGTGGGTTATGCTCGCCACTATGTCCAACCCACAGTGTCTGTAGAAGCAGCTCAGGTGCTGCAGGAATTTTACCTGGAGCTGCGAAAGCAAAACCACGGAGCAGACAGTACCCCTATCACCACTCGCCAACTGGAGTCTCTCATTCGCCTCACTGAGgcAAGAGCAAGACTGGATCTTCGAGAACAAGCTACAAAAACAGATGCAGAAGATGTTGTAGAGATAATGAAACACAGCTTACTAGATACCTTTTCGGATGAGTTTGGGCGACTAGATTTTGATCGCTCTCAGCTGGGCTCTGGAATGAGCAACAGATCGCAAGCAAAGAAGTTTGTGGCAGCTCTCAACCAAATAGCTGAGCGGACCTACAAGACTATGTTTGAATCCCAGCAGCTCCGACAAATTGCTAAGGAGCTGCAGATACAGgtAGCAGATTTTGAAGGCTTCATCAGCTCCTTGAATGAACAAGGCTACCTTCTGAAAAAGGGACCAAAGGTTTACCAACTTCAGACCATTTGATTTGGCTATGGAGTCCAGTTATTAATACCAATTctacaatgtaacaaaaattaCTAATCTTGATTTTTACACCTTTGTTCTatagacatttaattaatgaactGTGTAATTTTTAATTGGTATGACACATTTTTCTGTCCTGTTCTTGTAAGTTCTGATGTTCTCTGTAATGTATTGATAACTTCAATCACTATGTCAATAATACCTTcattttctgtaacatttttgtagaaaaagaaaagttcagGACATGCCATTTTAACCTCACgtgctgtatttgttatttctttactgtatagtgtttattatttgtgttcctatttaaaatatgaatttcaa

Function

GO: NA

KEGG:

id description
K10737 MCM8; DNA helicase MCM8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8115 lncRNA upstream 62516 38775953 ~ 38777500 (+) True G6627
TU8105 lncRNA upstream 83764 38749914 ~ 38756252 (+) True G6617
TU8085 lncRNA upstream 223552 38616244 ~ 38616464 (+) True G6598
TU8073 lncRNA upstream 373373 38466396 ~ 38466643 (+) True G6586
TU8071 lncRNA upstream 421240 38416598 ~ 38418776 (+) True G6585
TU8146 lncRNA downstream 8107 38858118 ~ 38859005 (+) True G6653
TU8160 lncRNA downstream 76727 38926738 ~ 38927030 (+) True G6667
TU8170 lncRNA downstream 116667 38966678 ~ 38966890 (+) True G6676
TU8179 lncRNA downstream 272536 39122547 ~ 39148294 (+) True G6684
TU8180 lncRNA downstream 272667 39122678 ~ 39148294 (+) False G6684
AMCG00004222 mRNA upstream 6048 38825821 ~ 38833968 (+) True AMCG00004222
AMCG00004218 mRNA upstream 96450 38731508 ~ 38743566 (+) True AMCG00004218
AMCG00004214 mRNA upstream 613205 38225556 ~ 38226811 (+) True AMCG00004214
AMCG00004216 mRNA upstream 619921 38213382 ~ 38220095 (+) True AMCG00004216
AMCG00004215 mRNA upstream 653879 38088863 ~ 38186137 (+) True AMCG00004215
AMCG00004224 mRNA downstream 778 38850789 ~ 38855317 (+) True AMCG00004224
AMCG00004225 mRNA downstream 104126 38954137 ~ 38963635 (+) True AMCG00004225
AMCG00004228 mRNA downstream 399451 39249462 ~ 39293233 (+) True AMCG00004228
AMCG00004229 mRNA downstream 452698 39302709 ~ 39312703 (+) True AMCG00004229
AMCG00004230 mRNA downstream 547492 39397503 ~ 39436248 (+) True AMCG00004230
TU7800 other upstream 1839858 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 1948270 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 2065493 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 2565086 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 3073836 35752533 ~ 35766180 (+) True AMCG00004158
TU8679 other downstream 2609565 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 3362499 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 3838768 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 7111999 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 9296877 48146888 ~ 48147156 (+) True G7999

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022366 False 2915 mRNA 0.48 19 NC_007128.7 4325693 ~ 4365321 (+)
grasscarp (Ctenopharyngodon idella) CI01000310_00637385_00645599.mRNA True 2566 mRNA 0.47 15 CI01000310 636985 ~ 645599 (-)