RNA id: AMCG00004441


Basic Information

Item Value
RNA id AMCG00004441
length 3162
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00004441
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49797543 ~ 49804404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAGACTTCCGCCGCAGTGCACCACCAAATGTGTCCGTCGACGGCAGCGGAGTAGCATAACAAGGACTGACATACTTACAAGCACAATTGCACAGTAACAAGCAACCAAGACTTGTGTGTGTTGGAGTTTAATGATATTCTGCACTAAAACACATTCCGACCAGGACCATTTGGCCTGTAAAACACGTCAATGCAAACCGGAAAGCCCGTCAGCAGGGCAGCGGTCCCCGGGCTCGACCAGGAACAAGGGCAGCCGGAGCACCGAGCACAGGATGGCAACTTGCTCTGTAAACCGGAATGGTccttttaaagcaaaaatacattagGCACCGTCAATGGCATACTAAcgtgttatttttaatagcgGTTTGAAAACTGGGTATcaatatcagttttattttaattcttatcTGAAGATATAGAGACGTGTGCATAGGTTGTTAGACTTAGGTTACTTAAAACGCACCGAATACAGTATTCTGCTAACAGCTGTCCAGTAAAAAAATGTCAACTTTTAAAATGACGGCTACTGAACAACATCTAAACACGTTGAGATGAGGCTTGCTGAGACGGTCATACACTAGCTAGGTAATTATAGATGTAGTTTccgttgtttgtttgttaaagtgGACGGTTTCGCTCGGCTGGTATCGACAGTGTGACGGAGTCCAGGGAAGCGCAATTTGACACATTGGTTGAGCTCTCTCTGATATACGATGCTGTCTTCTGCGAAAATTGCCCCGCTGCCCACCTTCCCTCTTCTCATCAACTTCTGCATGTCCGCGTTGGGGTTTTTCGCTGCCCTTAAGCTGATACCCGCCTTCAAGGACCATTTTATCTCGGCCAGGCTGTACGGCATGGATCTGAACAAGACCTCCAAGAAGGAGATCCCCGAGTCTCAGGGAGTCATCAGTGGCACAGTGTTCCTCATCATCCTCTTCTGCTTCATCCCTGTGCCCTTCCTCGGCTGCTTTGTGGAGGAGCAGTGCCAAGGCTTCCCGCACAACGAGTTTGTGCAGCTGATCGGCGCTCTCCTGGCCATCTGCTGCATGATCTTCCTGGGCTTCGCGGACGACGTGCTCAACCTGCGCTGGCGCCACAAGCTGCTGCTGCCCACCATGGCCTCCCTGCCCCTGCTCATGGTCTACTTCACCAACTTTGGGAACACCGTCATTGTGGTGCCCAAGCCCTTCCGTGCCCTGCTGGGCTTGCACCTTGACCTGGGCATCCTCTACTATGTCTACATGGGAATGCTGGCTGTGTTTTGCACAAATGCCATCAACATCCTGGCAGGGATCAATGGCATCGAATCTGGCCAAGCCCTCTTCATCTCCGGTTCCATCATCGTCTTCAACCTGGTGGAGCTGAGTGggGACTTCAAAGATGACCATGTTTTCTCCTTGTACTTCATGATTCCTTTCTTCTTCACTACACTGGCCCTCTTCTATCACAACTGGTACCCCTCCTCTGTGTTTGTGGGAGACACCTTCTGTTACTTTGCAGGGATGACCTTCGCCGTGGTGGGCATCCTGGGCCACTTCAGCAAAACCATGCTGCTATTCTTCATCCCCCAGGTGCTCAACTTCCTGTACTCCCTGCCGCAGCTCTTCCATGTGGTGCCCTGCCCTCGACACCGCCTGCCCAGATTGAATCCTGAAACAGGGAAGCTGGGAATGAGCTACTCCAAATTCAAAAGGAAGGACCTGTCCAAGCTAGGAGACCTCATTCTGAAGgggGCGGAGGTGGTGCGGCTGATGGAGGTGCACAGAGGTGTCGAGGGAGAGGACGAGTTCATAGAGTGCAACAACATGACGCTCATCAATCTGGTGCTGAAAGTGCTGGGCCCGACGCACGAGAGGACGCTGACTGTAATCATGCTGCTGATACAGGTGCTGGGAAGCATGATTGCCTTCGGGATTCGCTATCACCTGGTACGCCTCTTCTATGACGTCTAGGCTTGCCACACCCAGAGGATGCTGGGAAACAAAGAGCAGTCATAATCCACCTGAGAATGTCCTCTatccattttcagttttaatccCGTAATTGTCGTCTACTGTGAAAATCTGAatgtaattttttgtttgtcttactTTTTGTGGGATGGTAGATCTCCTTTTCTGTTCGGGTGATGGGGTGCTGTCCtttaatgtttagttttgtttgtttcgtgTACAAGTTCACACAGACGGAGGAAGAAATTGAGAACAATGGTTTTCAGTTGATCGTATAATTTCCAGTTCGACACGTGCATAAACGAAGGTAGATGCAGATTTCAGCCCCAAACTGTTGGAAGCTGAGAAGTGgaataaaagtgaaaatggaCTTTTGTGCCTGTCTTTCTGAAGTAATGACTCTGTGATTCAGTGTGCTGTGCATCTGGGTCTGTGTCAGTCTTCAGTGTTAATCAGGACAGGGTGATGCCAGCTGTGGGTATCTTTCTCTACACTGCTCCATGGTAAACATAATCAGGTGGGCCATAACCTTTGAGGACTGTATTAGATTGGCAGGTTGGACTGTTTTCCTTGTGGCCGCCACAATTTAGCACAAGCCCCCTGTTTCAAACAGTCCTCAAAGAAGAGACATGCCTGGGTAACATGATAAGGAGACAACTTACTCTCCCCAGGTCTCCTTTGTCACTATATGATTTTTGAATTGTGGGGAGAACAGGTGGAAAAGCAGAAGCTGACACATTTACAAACCAAATAGAAATCAAGTTCATCCACTTCAAAACACTGTACATGAGAAGagcatgttttttaaagaacCAAGTGAGGAAAGGTACACCTGTCTCTCAAAATATAAGCAAAAGATCAAACCTTGCCTTTCTTCATGGAGAAATATGTGCAATGTGCTCTTCTCATCAGCATTACCGATTTTTTGCTACTGCTAGTGCATTTGTAAGCATTGTAGGTCTTAAAGACTTAAAAACGGGACCTCGGCCTGCTTATTTTAGAATACCAAATACAGATCTtggacctttttttttgtttggtccTATCTGTTCTACTGAATGAGATAATTTCTACTTAGATGTGTTCTTTGATTAACAGAATCTTCTGTAAAACCCCTTACAATGGCTTATGTACTTTGCTCACACTTGTTACATGCTTCCCATACAATTCATGAAGgaattaataaaatcattttttttccatgaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity molecular_function

KEGG:

id description
K01001 ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10096 lncRNA upstream 211448 49582118 ~ 49586095 (+) True G8188
TU10055 lncRNA upstream 361792 49434043 ~ 49435751 (+) True G8167
TU10030 lncRNA upstream 478727 49307845 ~ 49318816 (+) False AMCG00004425
TU10023 lncRNA upstream 549509 49246488 ~ 49248034 (+) True G8140
TU9977 lncRNA upstream 737488 49055360 ~ 49060055 (+) True AMCG00004424
TU10214 lncRNA downstream 6931 49811335 ~ 49814024 (+) False AMCG00004442
TU10255 lncRNA downstream 146215 49950619 ~ 49951516 (+) False AMCG00004449
TU10311 lncRNA downstream 262031 50066435 ~ 50068081 (+) True G8356
TU10334 lncRNA downstream 333225 50137629 ~ 50139705 (+) True G8371
TU10335 lncRNA downstream 338901 50143305 ~ 50144990 (+) True G8372
AMCG00004437 mRNA upstream 25290 49757121 ~ 49772253 (+) True AMCG00004437
AMCG00004434 mRNA upstream 166529 49608879 ~ 49631014 (+) True AMCG00004434
AMCG00004430 mRNA upstream 226243 49547269 ~ 49571300 (+) True AMCG00004430
AMCG00004431 mRNA upstream 274630 49519124 ~ 49522913 (+) True AMCG00004431
AMCG00004427 mRNA upstream 367735 49425765 ~ 49429808 (+) True AMCG00004427
AMCG00004442 mRNA downstream 1957 49806361 ~ 49814024 (+) True AMCG00004442
AMCG00004443 mRNA downstream 10869 49815273 ~ 49817818 (+) True AMCG00004443
AMCG00004454 mRNA downstream 78982 49883386 ~ 49893011 (+) True AMCG00004454
AMCG00004451 mRNA downstream 93232 49897636 ~ 49906851 (+) True AMCG00004451
AMCG00004449 mRNA downstream 134148 49938552 ~ 49951533 (+) True AMCG00004449
TU9962 other upstream 863448 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 1650387 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 3829237 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 7106434 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7581181 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 346860 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 939387 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 1310537 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 2135157 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 2184949 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058986 True 1295 mRNA 0.44 9 NC_007116.7 30588856 ~ 30595372 (+)