RNA id: AMCG00004453



Basic Information


Item Value
RNA id AMCG00004453
length 390
RNA type mRNA
GC content 0.69
exon number 1
gene id AMCG00004453
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49989275 ~ 49989664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGCACAGCTGTCGGTGGCGCTTCCCCGCTCGGCCCGGCGGGAGCAGCAACGCGGGCAGCGGTAGGAAAGCGGGCCGCATCCGGGTCACCGCCGCCCTCCGAACCGGTGCCGGAGCCGGACCGAACGCCAGTGTGCTCGGCCCGGGCTTCGACGCCGCGCTGCAGGTCTCCGCCGCCATCGGCAACAACCTGCGGAAATTTCGGGACGTTTTTGGGGAGGCGAGTGGTTCGAGCAGCGGGGAGGTAAGGGAGCCGCTGGGCAGAGCCACAGGGCGGGCAGGCGGGAGGGCAGGGGGCCGGGCCTGTGTGCAGGGACCCGCGGCCAACTGCTGCAACTTTACTGCCACCAGCTCCATCTTCCATCATGTGCTGTTTGGGTCTCACTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10255 lncRNA upstream 37759 49950619 ~ 49951516 (+) False AMCG00004449
TU10214 lncRNA upstream 175251 49811335 ~ 49814024 (+) False AMCG00004442
TU10096 lncRNA upstream 403180 49582118 ~ 49586095 (+) True G8188
TU10055 lncRNA upstream 553524 49434043 ~ 49435751 (+) True G8167
TU10030 lncRNA upstream 670459 49307845 ~ 49318816 (+) False AMCG00004425
TU10311 lncRNA downstream 76771 50066435 ~ 50068081 (+) True G8356
TU10334 lncRNA downstream 147965 50137629 ~ 50139705 (+) True G8371
TU10335 lncRNA downstream 153641 50143305 ~ 50144990 (+) True G8372
TU10336 lncRNA downstream 155707 50145371 ~ 50145823 (+) True G8373
TU10337 lncRNA downstream 158212 50147876 ~ 50148195 (+) True G8374
AMCG00004448 mRNA upstream 1784 49984727 ~ 49987491 (+) True AMCG00004448
AMCG00004450 mRNA upstream 6117 49968474 ~ 49983158 (+) True AMCG00004450
AMCG00004452 mRNA upstream 25559 49952140 ~ 49963716 (+) True AMCG00004452
AMCG00004449 mRNA upstream 37742 49938552 ~ 49951533 (+) True AMCG00004449
AMCG00004451 mRNA upstream 82424 49897636 ~ 49906851 (+) True AMCG00004451
AMCG00004455 mRNA downstream 14646 50004310 ~ 50032342 (+) True AMCG00004455
AMCG00004458 mRNA downstream 131765 50121429 ~ 50135834 (+) True AMCG00004458
AMCG00004459 mRNA downstream 195038 50184702 ~ 50187493 (+) True AMCG00004459
AMCG00004462 mRNA downstream 209841 50199505 ~ 50212190 (+) True AMCG00004462
AMCG00004464 mRNA downstream 222553 50212217 ~ 50214554 (+) True AMCG00004464
TU9962 other upstream 1055180 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 1842119 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4020969 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 7298166 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7772913 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 161600 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 754127 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 1125277 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1949897 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1999689 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile