RNA id: AMCG00004458


Basic Information

Item Value
RNA id AMCG00004458
length 5954
RNA type mRNA
GC content 0.42
exon number 16
gene id AMCG00004458
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50121429 ~ 50135834 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGGAGGCATATGTTTCTCATGAAAACTGACccattttctctgtctctgtgtctttgcaGTCACAGCACTGGTGacagtgaaaatgaaagacCAGGTGGAGGTATTGCTGGGAAAACAAGCTCACATCTCATGCAACTCCAGCTTCAGCGAGTTGCCCAGCAAAGTGATGATCCAGTGGTTTGTGGTGGAGAATGGCAATCGGGAGCGGATTCACTACAGCGAAGGGCAGGAGAACATCGCAGACACGGGCACCGACTACACGGAGCGCATCAGCGTGAGCAAGGACAACATCCTCACCATCAGAAACGTGCAGCTCAAGGACAATCGGGACTTCATCTGCCAAGTCGGGGGAATGTCAGCTGGGAATGGGGAGAGCAAGACAGAGCTGAAGGTTTACAATGCCCCGGAACCCCCCGAGATCGAGGGTACCCATTCAGGCATCTCTGTCACTCACGATGCACCATCCCAGATTGCAACCTGTAAAGCAAGGAATGGCTTCCCCAAACCCAACATCACATGGTACCAGAACCTCACCCCCCTGCAGAATGGTGAAGATGAGACCAAGGTGTCGACAAAGGTCACAAGGGAGTCCAGTGGCATGTTCACAGTGGACAGTCAGCTGTTCTACAAGGTGGCCAAGGAGGACATGAATACCACCTTCTACTGTGAGGTCAGCTACTTCATGCCAGGAACCCTAAACATGTTCGAGTCCAATCGCATCAACATCACTGTGCACTATCCCACGACAGAAGTGGAGTTTCGGAGAGAGTCTCCACACGGGCTGCTGAAACAGGGTGACACTGTGAAACTGCGTTGCCTGGCCAATGGGAACCCCCCACCGGCCTACTCTTTCTTCAAAGTTCAGGGTGAGAAGGAAATCGAGATCAAAGCTGAGCAGGACCTCTTGACCCTCAAAGACGTGAAGAGACAAGACAGTGGACTGTACCGCTGCAAGTCCCTTGACCTGGAAACCTTTGACGAATACACTGGAGACCTGGACATCTTTGTCAACTATCTGGAAGAAGCTGTTCTAACTCCAGCGGCCATTGCTTTTGTTGAGGAAGGACAAGATCTCAGCATGTCGTGTAATGCCCTGTCATCTCAGCAGACCAACATTGTGTGGCTGAAGGGTGATCAGAAAATCGGTAAGGGAAACACAATGACTTTGACGAACGCCAGCTTCGACACAGCTGGACAGTACACCTGCAAGGTCAGTGTGCCCACCCTGCCAGACTTGAAGACCAGCAGCACACTGGAAGTCAGAGTACAGGGAGCGCCCAGGCTGAGTTCTCCTAGGCTGAAGATAGAGCACAGAGTGGAGGCATTTGTCAACCTAACATGTGTAGCCCAAGGATACCCCCTGCCTAATATCACCTGGGACATTACAAGCTCCAAGACTTGGCAGGTGGTGATGAACCGCAAAGTCAAGCAAGGTGTGATTAGTGTGGTGACTGCGGAgatgacctctgacctcacTGCTGCTTGCAAAGCCACCAACGACCTTGGCGAAATGACGCAGCACTTCATAATATCTGCCATTCCTCTGGAGCCACCCACTACAGCCcctacaacaacaactacagTAGCACAACCccacatgaagaaaaacaagaaagAGGGTAATGGCGTCATCATCGTGGTCATCATTGTGTGCATCCTTCTCCTTGCCATCTTGGGCAGTGTGCTCTACTTCCTGTACAAGAAGGGCAAGATCCCCTGTGGCCGCTCGGGGAAGCAGGATTTAACGAAGGAGAAGGCCAGTAAAGATGACATCGTCGTGGAGCTGAAGGCAGAAAAGTCAAACGAGCAGGCTGGGCTGCTGCAGGGAGTCAATGGTGACAAGAAACCGCCTAATAACCAGTGTGAGAAGTACATCGACCTGCGGAACTGAGACCAGGAAGAGAAGAGCTGTAAGGAAACCGAATGTGGCTCTTTCTGTACCTCAGGCCGTGCGCAAGGTGTGATTTTGTGATACCTGTCAGCAAATCGAGATCAAGACTGagcttttgtaaatatattcacaaCCCTGCCTAGTCCACTTCCAAGATTTAAATTATGAGGCTTATATTGGCCATTGTCAGAGAAGAACTACTGAAATACTATCCTAGACAGGGAAAATAGATTGTTTGAATATGTCATCCCCCCCTTTTCAGCTCAAGTGCCATTCCTGGCAATAAGTATAAGTgatgatgatttttttgttgttcttatgaaaaaaaaaaaaaaaatatatatatatatatatatatttagttatttaaaataacctttCAAGAAAAAGTTTAAAAGACTCCCAACAATAACTTTAGTCGTGGCAGATTTTCTAaatttgttacttttttggtttagttCGCTTTCACCTGctcatacaattattttacagacaCAGTTTTTGAGTAGTTGAGATACGATAACGAATGGAAAAGACAGGTTTGTCACAAAATCCCACCTGCCTGCCTTGATAATCGTCCTCCATGTTCATATCCTACCGACTACTGCTCTACTATCCCAGCAACCTGACCCTCCTTCGCAGTGAGCTGATTAACAATAAACACTGTGCGCCCCAATGGGACTGACCGTCGCCAACTCCCCACACTGAAGACATGACTGGAGACACAGTGCCTTTTACCAAACACGCATAGATGCCCCAGATGAAGAAACTGCTTAAAGACATCTTGCAAAACCAGCTCCTTTTTACTTGACATTTAATCACGTAGCTTGGCCATGACACAATGTCTTTACTGTATTTAGTTATTAACAAAATTGTATGAGGATTTGGCATAAATATACCGTCCACAACCCCACCacttttgttgtatttaatgCATCATTACTGTAACAAAAGTCTTTTGCATGGGGGCTTGGAAAATACTCTTAATTTGGAAATCCATGTGTGAATATAGCAACCAGCAGGAGGCTACTTGACGCATCTGCGTTTGCTTGCAGTGTGTtggtttaataaacaaaacaagcagtTTTCCCTGAGGAACCTGCGATGTCTGCTTTCCCAGCCTAGCttggcagtttttattttccttatctGTGAAGATTTAGGGGAACCTTCCCACCCTCCTATTCATCCTTCTTGATGCATAATCAACACAAAACCTTTTAGCTCCAGTACACGCTAATGTATCTTTACTGGGCTCCCTAAAGTGGAAGCACACATTACATACAAtctacacacatatacaatttGCTGTAATAGATTATTTGCAAACGTTCTCTTTTGGTTTTGATGAACAGAGAAGCAAATATTGAAGTGGCAACTCATCACCCAGTGAATGCCTTCATAATGTCGGGAACATGATCTCTGAATGTTCATTGTTGTTTTAAGAGACGTCTTGACTACTTGTCAGTTtttttggtggttgttttttgtttttttaaatcctggtTAATTCACGgatgaatgaaaagaaagactCTCTAGGTATCCCCAGCATGCggagaaatgtgaaatatattcagGTGAAATTAGTTTGGGGTACCCCAGAGACCGTAAAGGGCTGTGTCAGTGTGGACGATATTCGCTCCCATGTAATTTGACCTATTGGAGCAAACTGTAAAGCAGCTCAGCTTTGTGGGACTCCAAGCGCCAATGCATGGCAGCTGTTGGATAGGTTGGAAAAACCATGGCACAAGAGGTACTGCCATAAAAGTTgggaaattaatggaaaaatacatcCACCAAGCCCAAACCTGTCGAGACAGCTTTAAATTTCTATGTAACCTTTTACTGATTGGCTTTTGTCCGAGTCACCTGGTCTCTCAGTTCCACTGTGTCAGCTCTTCTGGCATTAACAGGAAGAGACAGAAAACTAAATATCGAAACAAGAAGTCCAGAAGAAAGTGAGGGAGAAATTAAGTTCTCCACAGCACagagttgtgtgtgtttaagggtCTCTGGAGGAAGTTGTTTTGCAGACAAGGACCCCTAGTCGACCACAAAAGTGTTCTTCTATGCTGTTACTGCGCCACTGAGGCGAATCCTTAAAATCAGCGCAAATATGTCAGTTATTGCTATGGACTACTGTCAAGCTTGtaatgtttgtaaatatttatactgtaaaaGTCTAGAATAAGTAGTGGCTCAGCTTAAAAAGACAAGTTTGAGCCTTGTTCGTCAAAAAGATAGCATCGTATTCTAGAATACCTTCGGATTGCGGGATGTcacactttttttgttcttcaataattatgttttgttgaGAGATTAGtagcactgaaatatttttatttgtttttgttttaagagaaCGGGCTTCAACCCAAAACTAGAGTTAATCTTGAGatgaaatgttgcatttttatgACTGAGGTTTTGACTGCCGAGCAGAATGATTCCTGCGCCTGTCTTTGGGTGCCGGGCTGCATTGTGCTCGTGGGCTCAGAGGTAGTGCCCTGGGCTCCAGTTTGGGAGACAACCAAGAGCCAATATCATGTTtgcaataacattaaatacactaCTTGGAAAGAAAACTATACTGCAGTATAGAAATAATTGAGTTCACAACTTGAAAGAAATGGGGAATTAGAAGCCTTTTGGATACACAGTCTACATGAAAGTGTGtttaaagaaagagagatggcTTTTTCGTTTATACTACTGTTGACTTTTATTCATTGAATcttgtttttaacaaatactTCCAAAAGCACAAAACTACTCACCTGACTATTAGTGTGTCTTTCAGTCAAGCCTCGTCTGTTATATAACAGACCTAAACCGGAGTGGTTCACTGAAATACAGGGCATTGGATTCAGCTGTCAAGGTCAGTAGTCTGATAAACTGATACATTTTGGGACGCTAAGCCCTAGaacaaataacaaaagctaCCAGTGGGGTTGCCTTGGAAAGTTTCCGATAAGGCGAGAAAAGGAAGTGACAATCTCTTCTCCATTACTACACCTGACCCAGAACAGTGTTTGTATGGTCTATACATATTCACAGAGCGAGGTTTGACTGTGACATATTGAATTCAGGAAACACAATGTGTGTGAGGAAAGAAAAATGGATAGTGGGAGGTAAGACTATAGAAAAGAGTAAAACTGtgcctttttcattctttctttttgtgtggAACTGTTCAATTCAGGAAAAGAGGgggtcagagagacagaggtagAGGTGCGAATTGTACCAATCTTACCACTTGACCCCCTGTTCTTTGCCATTCAGTCCGGCTCATAAATGACATTCAGATTAAACTGACTTTGACACAGAGGCTaatcacataaaacaaaataaaaaaatgcatttgatcatGGGTTTCCATTGGAAAGAAGCAGGATGTCTGTACGAAATAAAATGCAGCCGTTACattctgtgtttttgctttgcgattggcattttttttttaaatccagacctaaataaacaaaaggggggttagtttattttatatgcttaattctgactaCCTGATACCACATACAATTCTATTGACACCATATAATGATTAGTAGAATTTCATTGActtaaacttaaataaacaaatagaagtaaagcaatgaaaaaatgaacacatttaaatgtaatattttgatcTGCAGTTTATTCTCATACCCCGCCcccaacacatacacaccacaAGCTATACATTACATCTCAACTCCTCTCTTCTAACCCcccacaagttttttttttttttttttttttaaagatctctTCTAACCAGTGGTACCTGTGTAAAAGACTGTTAAAACATTCAATCcattaattatgatttttttatattttcggtttgtttttgcaaatgtgtGTAAATTAAGATGTACTTGTGAACTGATgcttgcatttttgttttctcttgttttttactgtcattttgaaagaaaacaatgccaaataaaacgtaaaaaaaaaagctcaagaGAAGAAAGCTTTGTGTTTGCAtcacacattcataaataacCAGTAGAGGAAATAAATGCCATTGACACAAGCAA

Function

GO: NA

KEGG:

id description
K06534 MCAM, CD146; melanoma cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10311 lncRNA upstream 53348 50066435 ~ 50068081 (+) True G8356
TU10255 lncRNA upstream 169913 49950619 ~ 49951516 (+) False AMCG00004449
TU10214 lncRNA upstream 307405 49811335 ~ 49814024 (+) False AMCG00004442
TU10096 lncRNA upstream 535334 49582118 ~ 49586095 (+) True G8188
TU10055 lncRNA upstream 685678 49434043 ~ 49435751 (+) True G8167
TU10334 lncRNA downstream 1795 50137629 ~ 50139705 (+) True G8371
TU10335 lncRNA downstream 7471 50143305 ~ 50144990 (+) True G8372
TU10336 lncRNA downstream 9537 50145371 ~ 50145823 (+) True G8373
TU10337 lncRNA downstream 12042 50147876 ~ 50148195 (+) True G8374
TU10338 lncRNA downstream 13050 50148884 ~ 50149121 (+) True G8375
AMCG00004455 mRNA upstream 89087 50004310 ~ 50032342 (+) True AMCG00004455
AMCG00004453 mRNA upstream 131765 49989275 ~ 49989664 (+) True AMCG00004453
AMCG00004448 mRNA upstream 133938 49984727 ~ 49987491 (+) True AMCG00004448
AMCG00004450 mRNA upstream 138271 49968474 ~ 49983158 (+) True AMCG00004450
AMCG00004452 mRNA upstream 157713 49952140 ~ 49963716 (+) True AMCG00004452
AMCG00004459 mRNA downstream 48868 50184702 ~ 50187493 (+) True AMCG00004459
AMCG00004462 mRNA downstream 63671 50199505 ~ 50212190 (+) True AMCG00004462
AMCG00004464 mRNA downstream 76383 50212217 ~ 50214554 (+) True AMCG00004464
AMCG00004463 mRNA downstream 101090 50236924 ~ 50243043 (+) True AMCG00004463
AMCG00004468 mRNA downstream 122997 50258831 ~ 50265447 (+) True AMCG00004468
TU9962 other upstream 1187334 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 1974273 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 4153123 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 7430320 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 7905067 42212510 ~ 42216362 (+) False AMCG00004304
TU10340 other downstream 15430 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 607957 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 979107 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 1803727 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 1853519 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile