RNA id: AMCG00004501



Basic Information


Item Value
RNA id AMCG00004501
length 504
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00004501
representative False

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51939549 ~ 51946818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGTGGATCCGTCTCTCTGGACGGAGAGGAGAGCTGGGCTGAGCCGGCACGTCTGGATAACTTCTTTACAACCACCATTACTTACTGCGCTGCGCTTGGACGGCTGCATGTCGCGATGCTGTTAGTCTGTCGGGATCAAGCTGTGCGCATGCTCCGTGCCACTATTGCACTGGATACGGACAGTTTCCACTCGTTGTGTTGTATGCGTGACAATTGAGCTTTTAATCTCGGGTTATCTGACATCACAATAGTTttggaagaagaaaagagaaagaaagccgTGCAGGTTGATGGGTGATCTGATGTGGAAATGGCTACCGTATGCATTTGCCAGCTGTATAGAATTCTCCCCTGCCGACCGTGTGAAGTGGCAGATTGTGAAAAGTGCACGGAGAAAGATGTCTCAGCCCTGCTGGGGAAGAGGAGTCCATTTCATTTCATGTCTGTTAATCAGCAGACGGATGTGCTGCTGGTGGGAGGATTTGATGGCAGACAGATCCTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU10683 lncRNA upstream 276125 51645849 ~ 51663424 (+) True G8658
TU10625 lncRNA upstream 824697 51114580 ~ 51114852 (+) True G8605
TU10616 lncRNA upstream 968247 50970956 ~ 50971302 (+) True G8596
TU10533 lncRNA upstream 1180189 50759075 ~ 50759360 (+) True G8538
TU10499 lncRNA upstream 1243982 50695224 ~ 50695567 (+) True G8509
TU10839 lncRNA downstream 144289 52090885 ~ 52091291 (+) True G8764
TU10851 lncRNA downstream 221720 52168316 ~ 52168540 (+) True G8775
TU10891 lncRNA downstream 322004 52268600 ~ 52268807 (+) True G8808
TU10894 lncRNA downstream 422497 52369093 ~ 52369476 (+) True G8811
TU10899 lncRNA downstream 586133 52532729 ~ 52533018 (+) True G8816
AMCG00004498 mRNA upstream 2149 51931349 ~ 51937400 (+) True AMCG00004498
AMCG00004500 mRNA upstream 14073 51919974 ~ 51925476 (+) True AMCG00004500
AMCG00004495 mRNA upstream 87345 51850684 ~ 51852204 (+) True AMCG00004495
AMCG00004496 mRNA upstream 138830 51792863 ~ 51800719 (+) True AMCG00004496
AMCG00004494 mRNA upstream 216363 51693103 ~ 51723186 (+) True AMCG00004494
AMCG00004504 mRNA downstream 1877 51948473 ~ 51950249 (+) True AMCG00004504
AMCG00004499 mRNA downstream 16773 51963369 ~ 51972205 (+) True AMCG00004499
AMCG00004509 mRNA downstream 42903 51989499 ~ 52001989 (+) False AMCG00004509
AMCG00004507 mRNA downstream 82143 52028739 ~ 52043455 (+) True AMCG00004507
AMCG00004506 mRNA downstream 102436 52049032 ~ 52057186 (+) True AMCG00004506
TU10626 other upstream 824287 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 1186200 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 1781830 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 3005454 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 3792393 48146888 ~ 48147156 (+) True G7999
TU10796 other downstream 42757 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 1236798 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 1317711 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 1657165 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 1689443 53636039 ~ 53643598 (+) False AMCG00004563

Expression Profile