RNA id: TU10780


Basic Information

Item Value
RNA id TU10780
length 1591
RNA type TUCP
GC content 0.45
exon number 6
gene id AMCG00004501
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51939549 ~ 51946818 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCTGGACGGAGAGGAGAGCTGGGCTGAGCCGGCACGTCTGGATAACTTCTTTACAACCACCATTACTTACTGCGCTGCGCTTGGACGGCTGCATGTCGCGATGCTGTTAGTCTGTCGGGATCAAGCTGTGCGCATGCTCCGTGCCACTATTGCACTGGATACGGACAGTTTCCACTCGTTGTGTTGTATGCGTGACAATTGAGCTTTTAATCTCGGGTTATCTGACATCACAATAGTTttggaagaagaaaagagaaagaaagccgTGCAGGTTGATGGGTGATCTGATGTGGAAATGGCTACCGTATGTTTACTTACCAGGGTATTTCCACTCTGACCTCAACCGCTCGGTTTTAGTTGCTGAAACAAATCCATGACAGGAAGAAGGAAATTAAGGGATTTCACGGAGTCAGGATGTCAAAACTGTGCTGGAATATGATGCAGATTGTCTGTGTCCTGGCAGTTTTTCTTCCCACTGTGATTTACACAGCAGAGGTCCTGCAGTGTCAGCATGACTACAAACAAATGCAGTACTTCAGCTGGAAGTTTGGAGACCAGCAGATTGCttttatggattttaaaaaaacatgtaatgcaAAAGTTGGATACAAATTagactgtaaaacaataaagccTACTGATCACCTACTGTACATCACCGTCAACGACATGAATGGAAGAAATGCTTCAATGTTCAGCTGTGATGTATATTCTGAAGATGATTATACAACTACCAGGGCTAGAACCCGAGCATTTGCCAGCTGTATAGAATTCTCCCCTGCCGCTGCTTTCATGGGACTTCTGCTGCAAATCATCCTTTCACAACTGTAGTCAGCTACTAAAGTGCTTATTTATAAAAGATATTTAACGAGTTACAGAATGGAATAGAATCAAGTCATTTATTCACTTAAAATCAACTATAAACAAATTGAGAACCACGGTGTCAAGGGCTTgtagtaaatgtaaatgtaaaaggtCCTTATGTAGTCACTATAACTTGGTAGGATACTTTGCCGGTGACCCACTCATCTTGCACATCAAGACAAAAGCATTGAGGACTAAGAAACTGAACTAAAGAAATTCTGATCTGTCTTGCTGTGCAATCACTACGGTTCAGTCTTTTGAATGACTCGGAGCTCTTGTGCTGGATGTTGCCAGTAAAGTTTAACCCTGATTTCAAatgcttattattttaaatgatcccTCTGTGACTTTCAAGACCGTGTGAAGTGGCAGATTGTGAAAAGTGCACGGAGAAAGATGTCTCAGCCCTGCTGGGGAAGAGGAGTCCATTTCATTTCATGTCTGTTAATCAGCAGACGGATGTGCTGCTGGTGGGAGGATTTGATGGCAGACAGATCCTGTGACGAGTGAGTTTTGCATTTCATCTGGAAAGGAGCTGTGACAAGCAGTTGAGGAAACTGGACTTGGGAAGATGCACACGAGAGACTCAGAAACGGTGCTGTTGTTTGCATCTGGATAATGGATTCCCCTAAAGCGGATGAAAAGGACGGAACTTGTAGCATTACCACACtgtctttgtttaaaacaagGATGACTGTTAGCAAAAATAAAGCATGTCATCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10683 lncRNA upstream 276137 51645849 ~ 51663424 (+) True G8658
TU10625 lncRNA upstream 824709 51114580 ~ 51114852 (+) True G8605
TU10616 lncRNA upstream 968259 50970956 ~ 50971302 (+) True G8596
TU10533 lncRNA upstream 1180201 50759075 ~ 50759360 (+) True G8538
TU10499 lncRNA upstream 1243994 50695224 ~ 50695567 (+) True G8509
TU10839 lncRNA downstream 144067 52090885 ~ 52091291 (+) True G8764
TU10851 lncRNA downstream 221498 52168316 ~ 52168540 (+) True G8775
TU10891 lncRNA downstream 321782 52268600 ~ 52268807 (+) True G8808
TU10894 lncRNA downstream 422275 52369093 ~ 52369476 (+) True G8811
TU10899 lncRNA downstream 585911 52532729 ~ 52533018 (+) True G8816
AMCG00004498 mRNA upstream 2161 51931349 ~ 51937400 (+) True AMCG00004498
AMCG00004500 mRNA upstream 14085 51919974 ~ 51925476 (+) True AMCG00004500
AMCG00004495 mRNA upstream 87357 51850684 ~ 51852204 (+) True AMCG00004495
AMCG00004496 mRNA upstream 138842 51792863 ~ 51800719 (+) True AMCG00004496
AMCG00004494 mRNA upstream 216375 51693103 ~ 51723186 (+) True AMCG00004494
AMCG00004504 mRNA downstream 1655 51948473 ~ 51950249 (+) True AMCG00004504
AMCG00004499 mRNA downstream 16551 51963369 ~ 51972205 (+) True AMCG00004499
AMCG00004509 mRNA downstream 42681 51989499 ~ 52001989 (+) False AMCG00004509
AMCG00004507 mRNA downstream 81921 52028739 ~ 52043455 (+) True AMCG00004507
AMCG00004506 mRNA downstream 102214 52049032 ~ 52057186 (+) True AMCG00004506
TU10626 other upstream 824299 51114941 ~ 51115262 (+) True G8606
TU10527 other upstream 1186212 50743791 ~ 50753349 (+) False AMCG00004477
TU10340 other upstream 1781842 50151264 ~ 50157719 (+) True G8377
TU9962 other upstream 3005466 48932450 ~ 48934095 (+) True G8099
TU9841 other upstream 3792405 48146888 ~ 48147156 (+) True G7999
TU10796 other downstream 42535 51989353 ~ 52013630 (+) True AMCG00004509
TU11143 other downstream 1236576 53183394 ~ 53183983 (+) True G9012
TU11164 other downstream 1317489 53264307 ~ 53270070 (+) False AMCG00004546
TU11263 other downstream 1656943 53603761 ~ 53607898 (+) True G9118
TU11273 other downstream 1689221 53636039 ~ 53643598 (+) False AMCG00004563

Expression Profile