RNA id: TU11263


Basic Information

Item Value
RNA id TU11263
length 3784
RNA type TUCP
GC content 0.36
exon number 2
gene id G9118
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53603761 ~ 53607898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGATTTTCACTCCTCGGTCGCACTGTTGAACCCCGGACACTGGAGAAGTTTTGCACAACACAGAAACTAACACCAGAGAGGATCACCTTCCGTccaagtctgcgcagatctgcacaatcccgccgatcccattggtggagccgcgcagaactgcggacatctgcgcgaCCATTGTTATGGAAAGGCAGCCGACAAAGACAAAGGCAGTTTAAACTAATATGATCCGACCCTGGGAAGTCGCTCAGCGCCGAGGTCTTCAGAGACCCGACATCTTGATTTGGTTATATAGCTCGGAACATCGCACCACCCAATTCGTGAACTTTAAAAACAGCTTCCCAACAACACATTACAAACAAACTGGACAAACGGGAACGTCGCCCGTGAGAGCGCAATTCCCGCAAGTTCCCCGCACGGCGCTCAGTGCGAGTGAGTTCGGGGGAAAAGACTCGTTTCCCGCAGAAAGCAACGCCAAACACGGGGAACAACAGACACCGAGGGGCATCACAGCTCGGCGTGACGGTGGGGTAGAGCCGCCGGCGCTCACCTGCGAGGAGCAAGACGAGGAAGGCGCGGGCAAACATGTCGACACTCGGCGGTGCGTCCCTTTGTTATCCTCttccctcttccctctctttccctccagCCGCTGAGAAGAGCGACGCACAGATGCGGGTCCCGCTGACGATCCCACTCAAACGCAGAGAAGCGACCTGTTACCGCGGCCGAGCGCAGGAGAGGCAGACGGGCGCACAGCCGCGCAGGGATCGGCTCCTCGGTTCCACGGCTCCCGGCTCCTCCGCCTCCTCTCCCCGCCCTTCCGCGTTGCGCACCTGCCCGCCAGGTGCGATTGGAGGAGCCGCACGGCCCGCCCTGCGGCCGAGGAGCGGGTTTGGGGAGACAGTATCGGTGTTACTGGTTTCAGGCCAGGGTTACAGCGCGCACTTCACTGCGTCTCGGGTTTTCCCTGAAACAATGTCCTCACATTGAGTTACTGATTAACTTTTTAAGTTCTTTCGAAGTAATGGAACCGCATTTGACCTttcacctgtctctctctttctacctatacatatataaatggaatAGATTGTATTACCTGTCTTTCCATAACTgcgttaaataaataaatagtacatattcaaacttaaaaaaaaaacagaaatgtagtGTTATCTGGGTCATTTAAACATAGGGTACATTCCGACTGtgtaaactaaaaataacttttaattaataaacgaatattatttatttaaacctttaGCATTATATAATTAGGCAAATCACATAcctacatacattttatgtatatatagtgtgtgtatatacacttgTTTACTTATTTGTGGACTGTTTCATTCTCAATTAAGCATGACGTGAAAACAGAAACTTATAAGATACTCATAAATTAACACCGTCTACCCCCTAGCGGTCGACACAGATCTATGTCACAAGTGAAACAAACCCAGATTTCAAATCAGTCGCAAATTGACCATAAACTGACACATATTACAtctaataataagaataaaaaaaatcatatcctGTTATATTTAGCcatgttatttttgtacaatGTACTTGCAGTGAAGGtcacatttatacaaaataaatggtcaGTACAAGCAGGTTAATCATTCctgtaacattttacaacttcaaCATTTTGAACGGGTCTAATCAAAAACATCCCGTAAAAACAGAAGGATCGAAAATGGATTATGAATCTGGCCAACTGAACCAAGCAGAGTTCAAACTGCTTCTGCAATTCACTCCAGTCTGCCCAGATCCAGTACAATAACATACAAACCATCCCGAGGGGCCTTTGCCATCCCCCTTTACTGTGAAGCAACTAGCCTGTTGAACTGGGCCCAAACCACTGACCCCTGACCAAGACTTATGCAGTAAAGAGAGTATGGATCATCTTCTGCTACCAATATGTTTAACCCAGCACAGGTCATGGGAGAACAGACAATCTTAAcgcacacaaaaagaaaatccagGTGACGTTTATTGAACATGGTTTGTaaatacaagacaaaaaaaaaaaaaacactgaaataacagGATTCCACAAATCTATTAATGAGTAATCCAAATTGGGATTGCCAGCCAAAGACGTCTAGAGACCTCTTGTGCTCTCTGACACTGCGAGTTTGTCCATCACAATCGCACGGCTTTGGAGGAGCAGAAAGGATGTACAGCATTGttattgaatgtgattttttcCTGAGGCCTTGCTGTCCTGTGCCGCACATAGCCGTTGTTGGAAACAATTCTCCAGGCAGCGTGAAAATGAGTTAGGCCGGGGGACCTCTCCGAGCCGGCTTAAGCCCAGGATGTGAAAGGAGAACCTGAACCTCCCAAGATGAGCACATTTGGAGATTTTACctacaacaagaaaaacaacatgccCTCCTCAGCTGCCAGGGTGAGAAAGGAACAGAGGTCTGGGGTGGGTCCTCTCATATCACTctacacacgctcacacacgcacaaacacacacacgcactctcactcacactctatGGTCTGAGAGGTGCTATTCTCTGGAGGGTAAGGGCTGGTCTTCCAGGTCTTTTTTTAACTGGGCTGATTCACCAAAGTTCAAAAAGGGAAAGGGGACAGATCCTCCAAACACAAGGGTGGAGCcacacagaaacattttcagggaaaaaataaaataaaaatatatagatgtatacataatcataataaaaacaataagagGGAGGTTCCCATGGTTTGCAGGGTTACCACATCTGAGCTGTGGTCTGCCcatgtgggggagggggggggggcacagagATGAGACTCTCCCAGGACGCCCTCCTACCAAGCTTTGACACTTCCAGTCCAAGATGGTGTCCGCAAGATGTGGCAACGCGGTGAGCTGTACCGGTGAAATGGATTTCCCCAGGTTGCCTCGTTGTCTGGTGACCACTGTGCCTCTCGCTTCCCTTGGGACACACGTGGACTGGTTGGCCCTCTCGGCAGAGTCATCACTTACCCAGCTTCCAGCTCTTGCCCATCCCATCGTGTCCACGTACTGGTATTTGACACCAAAAATTGGTCTTTGGCACAGATCCATCTCAAGCAGAGCACGGCGCTACAGCTGCGCCCAGAGGGCCCAACCCGAGCTGCACCAAACACAACTCAAGCTGTCTGGAGTGGTCAGGTAAACTGGACCCTGCTTTAGACCAAAGTCTCCGTAGTGAGGCACAGCAGGGCGGGAAAGAAAACACTATGCAAGGCAGTTTGGAGTCATTTCAGGTTTCGCAAGCTGCAAACCTGGTAGCGTTTTAGTTGAGGTTTTGTCCATTTTCAGTGTACTGGCATCGGTGGGAAGTTAAAACATTAGGGAGGTCTGTGTGCTTCTCTCCCTCACCATCACCGTGCAGCTCGTAGAGACAGATATGGGTCCAACTGCTGTGCGGAAAGTCGTTTACATCCCGGCGAcagaatatataatttgtacaaAGTCAAACGGGGTTAATTTATTCAATTGGGCAAAGGGTAACATATACAAAAGGGTTTGactttgcatgtgtgtgtgcatgtgtgtgtctgcatgtgtgtgtgcgcacgtgTGTCTATCTACACGACGAATCCTTTACACTAGCTGTTTAAGCAGTCGTACCCTCTGGGGTACCAATAGGCACGGCCactcctctccccccccacccccaatcaTTGTGGATCTGCACTTGTTGCTCCCACAATGCCGTGCTGTCGGAGCTGACTTCGCAAGAGCTGGTTTTTGGATTTCCACTCCTCTACct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11185 lncRNA upstream 303889 53299663 ~ 53299872 (+) True G9043
TU11127 lncRNA upstream 457967 53145595 ~ 53145794 (+) True G9000
TU11113 lncRNA upstream 484065 53117197 ~ 53119696 (+) True G8987
TU11108 lncRNA upstream 496764 53106744 ~ 53106997 (+) True G8982
TU11001 lncRNA upstream 700979 52839448 ~ 52902782 (+) True G8900
TU11289 lncRNA downstream 69666 53677564 ~ 53762566 (+) False G9129
TU11296 lncRNA downstream 69666 53677564 ~ 53762566 (+) False G9129
TU11299 lncRNA downstream 69666 53677564 ~ 53831921 (+) True G9129
TU11298 lncRNA downstream 109169 53717067 ~ 53719277 (+) False G9129
TU11285 lncRNA downstream 151352 53759250 ~ 53761273 (+) False G9129
AMCG00004555 mRNA upstream 308550 53293103 ~ 53295211 (+) True AMCG00004555
AMCG00004554 mRNA upstream 319772 53273700 ~ 53283989 (+) True AMCG00004554
AMCG00004546 mRNA upstream 333507 53259179 ~ 53270254 (+) True AMCG00004546
AMCG00004549 mRNA upstream 359031 53233791 ~ 53244730 (+) True AMCG00004549
AMCG00004547 mRNA upstream 392988 53206423 ~ 53210773 (+) True AMCG00004547
AMCG00004563 mRNA downstream 30430 53638328 ~ 53670522 (+) True AMCG00004563
AMCG00004565 mRNA downstream 99196 53707094 ~ 53707967 (+) True AMCG00004565
AMCG00004564 mRNA downstream 109169 53717067 ~ 53719775 (+) True AMCG00004564
AMCG00004566 mRNA downstream 219049 53826947 ~ 53848054 (+) True AMCG00004566
AMCG00004568 mRNA downstream 241730 53849628 ~ 53863217 (+) True AMCG00004568
TU11164 other upstream 333691 53264307 ~ 53270070 (+) False AMCG00004546
TU11143 other upstream 419778 53183394 ~ 53183983 (+) True G9012
TU10796 other upstream 1590131 51989353 ~ 52013630 (+) True AMCG00004509
TU10780 other upstream 1656943 51939561 ~ 51946818 (+) True AMCG00004501
TU10626 other upstream 2488499 51114941 ~ 51115262 (+) True G8606
TU11273 other downstream 28141 53636039 ~ 53643598 (+) False AMCG00004563
TU11276 other downstream 40113 53648011 ~ 53843859 (+) True G9128
TU11303 other downstream 158645 53766543 ~ 53767110 (+) True G9132
TU11293 other downstream 240024 53847922 ~ 53849754 (+) False G9129
TU11395 other downstream 424133 54032031 ~ 54033307 (+) True G9197

Expression Profile