RNA id: TU4660


Basic Information

Item Value
RNA id TU4660
length 467
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G3845
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22076992 ~ 22077458 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaggttgatgtgttagaagcaggaaaaatgggcaagcgtaagaatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagtatctccaaaactgcagctcttgtggggtgttcctggtctgcagtggtcagtacctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacaaggtcatgggcggccaaggctcactgatgcacgtggggagcgaaggctgtcccgtgtggtctgatccaacagacgagctactgtagctgaaattgctgaaaaagtcaATGCTGGTTCTAATAGAAAGGTGTCTGAACACACattgcatcgcagtttgttgcgtatg

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG:

id description
ko00910 Nitrogen metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4605 lncRNA upstream 60540 21917276 ~ 22016452 (+) True G3798
TU4577 lncRNA upstream 175344 21890523 ~ 21901648 (+) False AMCG00003853
TU4562 lncRNA upstream 317193 21750527 ~ 21759799 (+) True G3770
TU4559 lncRNA upstream 344293 21732491 ~ 21732699 (+) True G3767
TU4549 lncRNA upstream 476132 21600632 ~ 21600860 (+) True G3757
TU4682 lncRNA downstream 92882 22170340 ~ 22172105 (+) True G3863
TU4690 lncRNA downstream 105785 22183243 ~ 22184811 (+) True G3871
TU4697 lncRNA downstream 119856 22197314 ~ 22200678 (+) True G3878
TU4705 lncRNA downstream 147260 22224718 ~ 22225101 (+) True G3884
TU4707 lncRNA downstream 158638 22236096 ~ 22240098 (+) True G3886
AMCG00003856 mRNA upstream 95402 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 118007 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 175127 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 214193 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003847 mRNA upstream 541234 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003861 mRNA downstream 23830 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003873 mRNA downstream 397629 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003871 mRNA downstream 436277 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 450901 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 605558 22683016 ~ 22744727 (+) True AMCG00003874
TU4606 other upstream 153205 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 316362 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 527459 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 2707726 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3924678 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1632780 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2605942 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3716594 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5984905 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5985216 28062674 ~ 28067786 (+) False G4831

Expression Profile