RNA id: TU4697


Basic Information

Item Value
RNA id TU4697
length 2922
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G3878
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22197314 ~ 22200678 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACGAGTTCAATGTGTTGAcctggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatctgtggaggccccacctcacaacttacaggacttaaaggatctgctgctaatgtcttggtgccggataccacagcacaccttcagaggtctagtggagtccatgccacgatgggtcagggcttcttttgggacctacacaatattaggcaggtggttataatgttatggctgatcagtataTATAATCTCTACGTTCTAGAAGTTCTCAGGTAAATTAttgcaattgtattttattaacttaaaacaaatcaaattctACATGAATCAGGTTAGCCAATTAATGTGCTGTTTGTATTggtcaaaaatatatttttactgaCCCTGTAACCGTCAGGATTCAAGAATCGGGATTAACTGTTTAATCACCATTCAGTAAGAAAGTGAAATTGtacattgtatatattgaaggtagattacatttttcatcagtagcctttatctttaaaatgtcatatatGCTATGTTTCATATAAtcattgtttgtttctgatttttttaatgccatgttgttttaataattgaGCCAAATTATTATGGCATGATCAGATGTTTACTGTGGATGCTAGGTTATCTGTTAGTAATGTCCTGTGCAAGTGTAGTTGGGTACAATCAAGGATTTAGGGAGTGTGATGATTTACACAGttgtaaaaatatttcagaaaatgggGACAGTGAAAAGTGTTACCACCACAGATCAAGGTCTTTGAGGTTTTAGTGGAAATTTGCACACATGCATTTTGCCACTTAGTGCAACATGGGCCAAATCTCGTCtcacgtaaaaaaaaaatgttaccttTTCTCTTTTGTGATGCTTAAGCATAGATGTGTTTAGTGGGTGTGGTTGTGGGGGTGTGTGTCCTCCACAAAATAGATCAATTTTGAAGTCCAGTTTGAATTTTGCAAACAATTCCCTCATCTAAAACAAGGCATCCAAATACATGTTAAATCTTTGTAAGTGTTTAACGTAGCGAGGGAAAGAAACCAATCAATGGTCAGTTAAAGTGTTAAAATCAGTGGAGATGATTGTTCAACTTAGAGCTACTATTCCTCTGTTCAATGTATTTGTTGGTTAATGCCCTACTTAATCATTGATTCTTGAAAAAGGAATGATGTATAAGTGTCAACATACAGCTTTAAATCCCAACCATACAAGTGtatcaaagctttttttaatttttccataGACCTGCACTCCAGTTAAGTACCTGCAAAATTGGTCCTCAAGCCAACTATTGCTGCTGTGGGTTGATACTTTTTACTTTATGCTATATACATCTAACTGAAGAACATTGTCCAAATGATAGTCAATATCTGCTTAGACAAAGATTAGTAGTTACACTTGtatgaaatatttttatatgtagcCCAATAactgtttgctttgtttctagAAACAGTACACTGACAGTCATTGATCATTGTGAAAGACTAATACAGGATAAAAATGTCTCAACTACACTTCAGATCATTCTTTACCATGTTTTCCTACTAAACGTTATAGCAGTGCATTCCAAAGGCTGATTACGTTCCTTGATCCTTTGCACAGATGgtgtcgttttgttttgttgtttctataCTATAGGACTCCTTAAACAATAGCAGCACATAAACATCAAGCTTTGAGTATTTTTAGTAGCCACTTTAGAACTGTTACATAGGCAAGAGCTGTAGTGAGTTCAGCTAGTGCTGTTCACTGCTTGTGTCATCCAATACTACCTTTGGCAtaaatagttttagttttttcctatGGCTATTGTTCAGGGTACAGAATTGTATTTGCTCAGAATAAAACACTTCCGTTTCATTGCTCCTGTGATAAAGATATAGCAGAGAACATTGTTTCAAAACTTGTCTCAAGGTTATCAGAACCAAACTGTAACAATAACTTGATATTTTGGAATTTGAAACAGTCTTCTCACATAAttaaactaaagaaaacaacttgatatataatttactgattgattcaaaaaacaaactggacATTGGATGGAGgaagcattattttaaatttttggcttttttattttacaaacatttttgatAAATTTCCAACCTCTTAGTCCCTTTTTGTTACATAATATTCTGCCTATAAGAAAAGGCAAAATGTAGCTGCTTGCAGAAGTGCCACTATGGTGTTGTTACAGTAATTAGCTTTAGTGccttatttaaagttaaattatggaattcatttactgtataaccaaggtTAATATGTGGTGAATTTAATCTAGAAAGCTCATAATTGGGAGTAAGCACATAATGTCCATGTtcaatttatatacacacacgtagtatttttttggggggtggggggggtttctTCTGTTTATATGTGGTAGTATGGAAAGGTATTGctgcaaacacagagagaaagaaaaataacattttgaggGCCACTgctacagatttttttttgtaatttttttgttgtttccatGAAAAAAAGGTGTTTTACTCTGagaccatttgtagttcttatgcGTAATCTCATGATATGACAGGAATGATAGGAACTTAAACTACATTGATCTGGCAAGTCGTTCTAAAAACGCGTCTGTTAAatttcattgtgttgtgttttcataaaacaaaaagaaaatgctgccACAAAATATACTACTTAGAATCATGTACCAGACACATTCAACAGGGCTTTGTGGAAACTCAAGCCACCATCAGACACCTTCACACACTGGATCCTGAAGGAGTCATGTTAGAAAGTGTCACATAAGTTATAGTTTATTAAGTTTCTATCCTTTCTATCAAGTTCTGTCACATCTCGAGAttacccataagaactacacattttttttcccacgGCAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4690 lncRNA upstream 12503 22183243 ~ 22184811 (+) True G3871
TU4682 lncRNA upstream 25209 22170340 ~ 22172105 (+) True G3863
TU4660 lncRNA upstream 119856 22076992 ~ 22077458 (+) True G3845
TU4605 lncRNA upstream 180862 21917276 ~ 22016452 (+) True G3798
TU4577 lncRNA upstream 295666 21890523 ~ 21901648 (+) False AMCG00003853
TU4705 lncRNA downstream 24040 22224718 ~ 22225101 (+) True G3884
TU4707 lncRNA downstream 35418 22236096 ~ 22240098 (+) True G3886
TU4730 lncRNA downstream 201926 22402604 ~ 22404854 (+) True G3907
TU4740 lncRNA downstream 299849 22500527 ~ 22500826 (+) True G3914
TU4741 lncRNA downstream 300239 22500917 ~ 22501829 (+) True G3915
AMCG00003861 mRNA upstream 90584 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003856 mRNA upstream 215724 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 238329 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 295449 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 334515 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003873 mRNA downstream 274409 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003871 mRNA downstream 313057 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 327681 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 482338 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003876 mRNA downstream 623092 22823770 ~ 22829038 (+) True AMCG00003876
TU4606 other upstream 273527 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 436684 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 647781 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 2828048 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4045000 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1509560 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2482722 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3593374 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5861685 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5861996 28062674 ~ 28067786 (+) False G4831

Expression Profile