RNA id: TU4730


Basic Information

Item Value
RNA id TU4730
length 2189
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G3907
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22402604 ~ 22404854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATGCTGCAGTACAGATCTATGCCAGAAAGATCAACTCAGACCACCTTCTTTAcataacatatattaaaaaaataaaatgattaccTGAATCATGGTCCATGAATTGTCCTTATTTGGAGTCAGTGCTTGAATGCTGGTCACAtgcttcaaaaacacatttaaataatgggTCTAGGCAGATTTCTGTTCTTTTGCCTTTATTGTAAGCAAAACAACTCTTAAATaccatacattacattaaaaaaaatacaataaaaaaagaaaaagaagcttGCTGATGTACAGAACAAacatacagaaacattttttgtccTGTAGAAATCTGTGAATTTCAAAATCACtcaaggtatatatatatattaaaaaataataataatcagggcAAATGCTCTCCTTTAAATTTTATGTAAGAgtacatgcaaattaaaaattctTGTAATACATTACCAGCTCTTCAAAATGCCAACAGTGTGGAAATGgaacaaagataaataaataaaatgaacccACCACCACCCTGTTTAGAGCAGTATCTTTACACCAAGATAACAAACATTCCTGAATGTgaacattaaatatgtaattgcattttattaatactgtCAACACTATTTTAAAGCCCTGAAAGCTGTAAAACAAAGTAACCCGGTAcggaaaataaaactgtattatgaaaataaaactaaatcagcACCATATTTTCCCTCCAAAAAGGCATTCTAACGGAGAAGAATTGGAAAACTACAATAGCAAAGAAGATAATCTGTTTTATGAAATCCCCAAACAGAGAGAGTCAAGAACTCTGGATGTTAAATCCACATTAGTACCAAGATAAGCAGCAAGCATTTATGGTAATACGTTCAAAGTTTCACAGTCATAAAATTGTAGCAAAATctttcattacttttatttatttatgaacaaCAAGTTAGTTttaattctggaaaaaaaaagaaaaaaaaaagctcttccCCATTCCATTTACCTaacacttaataaaatacatttccagcaTCTTCTTTGGCAGCTTACCATAAAATATGGTTAAGAAAAATGTTATCTTAATAGCCATTGATAAGGAGTGCATTAGCatgaaaatggaaatatataatctttacATATAATTCTCACAATACACACTGTCCCTGCTGTAACACTCCTTGTCATCCAGCTGAACAATGGAGTGGATCATTAATACATTGCACATGGTTCCAAGCTACATGTGTTAAAATCTCTTAACTCGTAAGAAATGCTCCACAAATGTGGGCCTATACCATCTCTTTATAACAAATTTAGATATTACAATTAAAGATTTTCTAAAAAAGGGCCTCCCATGCTTTGATGTGCTTTCCATTTCTGGCTATGATTCTTACACAATCAGTGTGAACAGAAGTATGGTAAGGCTATCAGAGGTTTGTGAACTTATAAACTTACATACCACGTGTCCTCCAACACCTGGCAGTTGAGCGTCTTGTGCTTGTGTTCACCATAAAAGGTCATTGTTGTACGTATTGtagtaaagaaaacattaaatatgaataatctACAACACAGATTTataatgggggggaaaaaaacaaacacaaactaattTTACAGAACTGACTGAAGAAACTATACTGCTTTCAATCTATATGATGAACAGTATATTGGACAAGGTGTTCTGATATGTTGgtatgagaagaaaaaaatatatattgccaATTTCATAAtctgaataaaaagaaaattacttaAAATCGACCAAATAGATCACAGTGGAAGTTCTTAGCATTGACAAGTTCAAGAGAACTAATCATAGTGCTTTCCCCAACCCCATTTGAGCTGCTATACCTATCATTCTTTGTTCTGAGTTTCAGCTTTTCAAACTTAAAATGACAGACAGGAGAAAGGGAAAGCAAAGGGGCTCTAGACTTGACTTCTtgccaaaaaactaaattttaaaacttcaaaaacaccacagttaaattaaaaacgtcctttaaatagctttttctttttttgcttttgtacaAATAGTTCCTCAAAAACcgttaaaaaaagcacatgagGATCTGAAGTCAAGAGTCCATTTTGtggttttgatttctcagttaTGGCTGATGGGTGGTTGATCGTTTCAGGCCACCATTATAAGCCCTTCTTTTGAGGAGCACTTAGTTTTCTCATCCCTCTTATCCGGGACAA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4707 lncRNA upstream 162506 22236096 ~ 22240098 (+) True G3886
TU4705 lncRNA upstream 177503 22224718 ~ 22225101 (+) True G3884
TU4697 lncRNA upstream 201926 22197314 ~ 22200678 (+) True G3878
TU4690 lncRNA upstream 217793 22183243 ~ 22184811 (+) True G3871
TU4682 lncRNA upstream 230499 22170340 ~ 22172105 (+) True G3863
TU4740 lncRNA downstream 95673 22500527 ~ 22500826 (+) True G3914
TU4741 lncRNA downstream 96063 22500917 ~ 22501829 (+) True G3915
TU4802 lncRNA downstream 323868 22728722 ~ 22769227 (+) False AMCG00003874
TU4834 lncRNA downstream 464024 22868878 ~ 22869139 (+) True G3991
TU4909 lncRNA downstream 861416 23266270 ~ 23345005 (+) True G4057
AMCG00003861 mRNA upstream 295874 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003856 mRNA upstream 421014 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 443619 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 500739 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 539805 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003873 mRNA downstream 70233 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003871 mRNA downstream 108881 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 123505 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 278162 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003876 mRNA downstream 418916 22823770 ~ 22829038 (+) True AMCG00003876
TU4606 other upstream 478817 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 641974 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 853071 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3033338 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4250290 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1305384 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2278546 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3389198 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5657509 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5657820 28062674 ~ 28067786 (+) False G4831

Expression Profile