RNA id: TU4909


Basic Information

Item Value
RNA id TU4909
length 2506
lncRNA type read_through
GC content 0.35
exon number 2
gene id G4057
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23266270 ~ 23345005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttaaaaaaacaaataacTGTTTATATACATTCTTATTATTAGACAATATTCCTAGGTTTATTTCTAATATTGCTGATAGAACATTTAGATCAgaactttcacacacacagaaattgtACATACATCCATTGTTGCCATAAAGGCTGTGATCTGTGCTACACATTTTCATCAATCATTTAGCACTTTTTAATACAAAAGATTCAACCTGCAGTTTTTTAGGTCACACATCCCCAGACATTGGCAGTCAGATTTCCCACACAACCTTAGTGGCACAATGCTCAATGctgattaaaatattacatcatCACTGTACTTTAGACATGATTACACAATATGTAAGgcacacaaaacatttccaccataaacattaaaaaacaaaattatatatatttgtatattcatCACGTACAGTATACCTgcactgttaaaaaacaaaacatactggCTGTAGTCTACATgctacattttacacaaaccaCTACACAACATTGAAGATTCAGACAATTGTGTGTTGCAGCAGTGTCTGGCTAGATTGCCTTGCATCAGTAAACTGTGTATTATATTTCACATGAACAAAACGTAATACATTGCATATTATACTctctataataaatatatactgtatgttataTTTTACTTTCCCTATTTTGTTAGCTACATTtgttaatgtataaaataagaGGGCATATACATCAGAATATTTGTTAAAACGTACACAGTGTGGTTAAATCAGTGTCTGGTCTTTGGTTTGGTCTCACAGGCCTCACATAAACCTAAAAAACTGTTACTGCTCCAGCGTACTCTTCAAACATAAAGGAGAAATTAAGATTTTTATGACACAGTCAGTGACAAGACAATATATAGGAGCTAACTTTGTCAAAATTAATCAAAGTATAAAAACATCTTGGACATTTAAAGATGTTAAAATCCAATATGCTGCAGACTCTTATCGCTGGTagttaaacataatttaataaatcgCTGCTAGCATGGAAAAAGAAAGGCCagtcacccccccaccccgacaATGCTTAGTCTCTCATGTCTTGTTATATCCCATCATGCCTTTCTTTGTTGTTTACTATGGAGCCTTGCTGCAGTGGGACTGTTCTGCACTCTGGTACTAATTGCATGGTCAAAGTGAGACAGTTTCTGCCTCTGTTTCCTCCTAAACTTCATGAACAATGTCCAGTTTTTATCACAATGCTGGAACTAGAaccacatttccttttttttgttcaaaggAAATACTTTAGTCtatcaatggaaaccaaacaaCACATTAAACTATGTGTCTTTTTAGGGGCTCGGTTACGTGTACTGCTGGATGTTAGAACTGTAAACAATGTCTACAGGACATCTTCAAGACCTGGATCAGAAATGGAGTAAAATCCTACTAGGTTGGAAGGAAATTAGTATTTCTTCTGTTTAGAGAGAGTCAGCAGACCCACTTAGCAACCAATCTGTATAAACTGTGAAAGTAGTGTTGATCTTAGCTTCAGCATGCTCTTATCATATACGATATACAAGAAAAGCTCAGTGCCCCTTAAATGTGTAAACGTCACCAGATGATTCATTCATCCGTGAAAATCTAATAGGAGAATAAAACAATGGGATGGGAACACAGTGAGATTAATTAGATGAATCTGGTGTCTGCTTGTTGATATACTTCAGTTTATGTactgtcagtttgttttttaatctattgtGAATTACTCttgattttccttttccattataaaaaaaaaagataacttatttttacaaaaacatactgTTCAAGGGAGTTAGAAGCAACTCACAATATGCATATAGAAAATTATTGTAGTCAGTAATAGCATGCTTATAATATGATACAACTTTTGGCAACCGTAAAGACTTGTAATTTTAATGAAGGGATGAAAGCATTTTGACCTACATAATGCTATTCACATGCCAGTGGAGACCAAAACCCATATTTCAcccaaaacaaccaaacaaggTATCAAATATGCATAGAAGTGAATTTTCATTGCCCATTTAGTATTTTCCCTGCGTATATAAATTGTGACAGTTTCACTTTGCAGTACAAAAGATTGTGAAGTTGGTCAGTTTGCAAAAGCAGAATGGGCTCACCTCTAGTCATAGTTGCCTTCAGCTGACGAACCCCTGGATTTTCTGTATCGCCTTAATTTAAAACCCTAAATAATGAAAATCCCCATCACAATATAAATTTTCCACACAAAACCAGATCCCCAATAAGGCATGATTCAAAAGCATTAGCATTCAAAGTATCAGCAAAAAGAGAGGCcctattttatatgaataagtTCACAGACATCTAAAGACCAACATTCATGGCAAAGCTCTGGCTCACTGGGGCTCCTGGCAGGCAAAATGATGCAGCGACATTTGGCAAAGCAGCAGTGGCATGTTGAAAGATCAGGTGGAGGAAGTGTTATAATGCAGGACATGAAAAGGTCTCCAATTCCAGGATTTAAACACCTAAGATTCAGAATcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4834 lncRNA upstream 397131 22868878 ~ 22869139 (+) True G3991
TU4802 lncRNA upstream 497043 22728722 ~ 22769227 (+) False AMCG00003874
TU4741 lncRNA upstream 764441 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 765444 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 861416 22402604 ~ 22404854 (+) True G3907
TU4936 lncRNA downstream 17031 23362036 ~ 23362447 (+) True G4071
TU4956 lncRNA downstream 21186 23366191 ~ 23369996 (+) True G4089
TU5003 lncRNA downstream 176868 23521873 ~ 23531567 (+) False AMCG00003891
TU5055 lncRNA downstream 422403 23767408 ~ 23767759 (+) True G4162
TU5056 lncRNA downstream 428735 23773740 ~ 23774052 (+) True G4163
AMCG00003881 mRNA upstream 129029 23135448 ~ 23137241 (+) True AMCG00003881
AMCG00003882 mRNA upstream 184756 23073014 ~ 23081514 (+) True AMCG00003882
AMCG00003883 mRNA upstream 200340 23061960 ~ 23065930 (+) True AMCG00003883
AMCG00003879 mRNA upstream 220038 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003877 mRNA upstream 383409 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003889 mRNA downstream 29288 23374293 ~ 23389309 (+) True AMCG00003889
AMCG00003892 mRNA downstream 65330 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003894 mRNA downstream 100817 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003890 mRNA downstream 114835 23459840 ~ 23520587 (+) True AMCG00003890
AMCG00003891 mRNA downstream 176821 23521826 ~ 23533875 (+) True AMCG00003891
TU4606 other upstream 1342483 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1505640 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1716737 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3897004 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 5113956 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 365233 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1338395 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2449047 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4717358 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4717669 28062674 ~ 28067786 (+) False G4831

Expression Profile