RNA id: TU5311



Basic Information


Item Value
RNA id TU5311
length 521
RNA type TUCP
GC content 0.52
exon number 1
gene id G4360
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24683400 ~ 24683920 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGGGGAAATGCTAAAAGTCTTACAAAACAATACTTGGTCTAAGCTATTCCTCTTTTTCTAGCTTTGAAAGTGTCGCAATGGAGGCGCTAACGGGGCACACTTGGCTTGTCGCAGTACCTTCCCAGGTGAAGTGTCCGCCGCGGCGCCGGGCGTATTTAAAGCGGAACGGCTGGGCGAAGGGCTCCAGCAGCGGGATCTCCGCCGTCCAGAAGCTCGGCTCGCTGGGGGACAGGGCGGCTTGTGTCGGTTTCATGGCCACCGCCTTGTCGGGGTCCCACTCTCCCATCTCTCGCCTGGACCCCAACACAAACACCTCGACATCCGTGCTCTCCGGAGTCAGAATCACGCCAAACCGAAACAGCATCATTTTCCATTCAGGTGTGGGAAAACGTATAGAGAAATGATGTAAGTATTCACATTATCTGTTCGCAAGACTGGAGAAAATGAGCAGATACAGATACTCCAGTGCTACATGCCGAATGTAATGCATTAGGTTAATGTGCAACAAGCTTCAGGTTCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5310 lncRNA upstream 19217 24663939 ~ 24664183 (+) True G4359
TU5309 lncRNA upstream 20619 24657907 ~ 24662781 (+) True G4358
TU5305 lncRNA upstream 35645 24647509 ~ 24647755 (+) True G4354
TU5302 lncRNA upstream 72838 24610274 ~ 24610562 (+) True G4351
TU5174 lncRNA upstream 553508 24128552 ~ 24129892 (+) False AMCG00003910
TU5313 lncRNA downstream 1096 24685016 ~ 24687137 (+) True G4362
TU5432 lncRNA downstream 797678 25481598 ~ 25554089 (+) True G4452
TU5466 lncRNA downstream 926158 25610078 ~ 25610296 (+) True G4482
TU5503 lncRNA downstream 1130371 25814291 ~ 25888313 (+) True G4512
TU5526 lncRNA downstream 1245547 25929467 ~ 25929680 (+) True G4526
AMCG00003915 mRNA upstream 129284 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003912 mRNA upstream 143027 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003914 mRNA upstream 184844 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003913 mRNA upstream 259559 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003911 mRNA upstream 363752 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003918 mRNA downstream 85037 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003922 mRNA downstream 98874 24782794 ~ 24825995 (+) True AMCG00003922
AMCG00003925 mRNA downstream 145509 24829429 ~ 24829785 (+) True AMCG00003925
AMCG00003926 mRNA downstream 168740 24852660 ~ 24868862 (+) True AMCG00003926
AMCG00003923 mRNA downstream 200276 24884196 ~ 24966367 (+) True AMCG00003923
TU5028 other upstream 970266 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2759613 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2922770 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 3133867 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 5314134 19368193 ~ 19369266 (+) False AMCG00003828
TU5497 other downstream 1110132 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3378443 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3378754 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5587290 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 6204075 30887995 ~ 30894827 (+) True AMCG00004056

Expression Profile