RNA id: TU5612


Basic Information

Item Value
RNA id TU5612
length 391
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G4593
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26244247 ~ 26244637 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACGAGACTGCATAAAATAATCTCACACTTGATAAGCTAGAGCAACGCCATACCACAAGTGCAGTAGTTAAATGTCACAACTGTTTTTTTCTATAGACAGGTGTACATGTAATTATTCAGACTCCCTTCTTTTTGAAGTTTGGTGAGGAGTTGGGGGGGCGACATTATTCCAAATCACTCAAAATTACAGAAAGAGACAAAAGAGGATGGAGGAGGATGCTGCAGGGAGATCATTAtctctttgaaaaataaatcagactcACAACTGAAGAATTTAGAGGCTTCAAATCTTACCTTCTGGAGGCCGGTTGGATGTTGCCACAACAACCACCCCGTTCGCAAAGAGGTTTTCGAAGAGCTGTTTCAAAATCATGGCATCTGCAATGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5611 lncRNA upstream 193 26243662 ~ 26244054 (+) True G4592
TU5609 lncRNA upstream 14995 26228928 ~ 26229252 (+) True G4590
TU5608 lncRNA upstream 16747 26225493 ~ 26227500 (+) True G4589
TU5581 lncRNA upstream 159125 26083329 ~ 26085122 (+) True AMCG00003948
TU5542 lncRNA upstream 299895 25944143 ~ 25944352 (+) True G4536
TU5613 lncRNA downstream 11152 26255789 ~ 26256106 (+) True G4594
TU5614 lncRNA downstream 12144 26256781 ~ 26257025 (+) True G4595
TU5691 lncRNA downstream 338032 26582669 ~ 26586870 (+) False AMCG00003962
TU5732 lncRNA downstream 406648 26651285 ~ 26651567 (+) True G4694
TU5845 lncRNA downstream 1037367 27282004 ~ 27282241 (+) True G4787
AMCG00003948 mRNA upstream 160361 26081283 ~ 26083886 (+) False AMCG00003948
AMCG00003947 mRNA upstream 224422 26019544 ~ 26019825 (+) True AMCG00003947
AMCG00003944 mRNA upstream 278998 25946643 ~ 25965249 (+) True AMCG00003944
AMCG00003943 mRNA upstream 301200 25939882 ~ 25943047 (+) True AMCG00003943
AMCG00003937 mRNA upstream 305918 25933027 ~ 25938329 (+) True AMCG00003937
AMCG00003954 mRNA downstream 12789 26257426 ~ 26257668 (+) True AMCG00003954
AMCG00003949 mRNA downstream 27782 26272419 ~ 26279485 (+) True AMCG00003949
AMCG00003956 mRNA downstream 75130 26319767 ~ 26328027 (+) True AMCG00003956
AMCG00003955 mRNA downstream 89996 26334633 ~ 26339261 (+) True AMCG00003955
AMCG00003958 mRNA downstream 95211 26339848 ~ 26365099 (+) True AMCG00003958
TU5497 other upstream 448456 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1560327 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2531113 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4320460 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4483617 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 1817726 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 1818037 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 4026573 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4643358 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 6885483 33130120 ~ 33131186 (+) True G5642

Expression Profile