RNA id: TU5898


Basic Information

Item Value
RNA id TU5898
length 5639
RNA type TUCP
GC content 0.38
exon number 3
gene id G4831
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28062363 ~ 28103211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagagagagacacagagagagagagagagagagagagacggaaaaATCAAAAGAGGGAAAGCACGCTAGATCATGCGAGCTAAATTTGTGATCGCTGGAAATCGGGATGTTAGATTGATGCGGAAGATCGCCCTGATTCAGAGAAAAAGTTTTCATCTCACACGTGTGGAACAGAGGGCCCACGGGGAAACATGGCCGAAGGAGGGGCGGGTAAAGGTGGCGGAGACGATCCTGGGAAATTGCCCGAGCAGGAAGAAGAGGATGCATCCCAGATTCTGCACGGAACAGGCCACTGTAAATGGTTTAATGTCCGGATGGGCTTCGGATTTATATCCATGACCAGCCGAGGGGGGAGTCCTATCGAAACCCCTTTGGATGTATTCGTACACCAAATGCTACAACTGTGGTGGCCTGGATCACCACGCTAAGGAATGTAATTTACCTCCTCAGCCAAAGAAGTGCCATTACTGTCAGAGCATCATGCACATGGTGGCCCACTGTCCTCACAAGACTCTCACGCAGCAGCAGCCCGCCAGCGCTCAGGGAAGATACGAAGCCGAACCGCAGCCTTCTACCTCTGCTTTCCAGAGAGAAGGAGCCTACTCAACACCACCCTACTCTCAGGAGGGAAGAGCGGAGGTGCCGGAGAGACCGGGCCGCTCCCCCCAGGAAGCTTCCTCAAGTAAGTCTTCTGCGTCCCCGGAAGATCCCAGTCGGAAAGGACCATCTgtccaaaaaaggaaaaagacctaaaaaaaaggtattttctaAAAGTTCTCAAGCTTTTATGCTTCCTTTTTGAATCTGGATACAGCATCTACCTCATACTTGCAAAAGTACAGGGGAAGAAATCTCACTCAGTGCAGCTCAAGCTTTAAAAccaaggaacaaaacaaactactgtCTTACAAACTGTGAATTTGTCTTAAAGTATTTAACCAGTCCTCTTCTGATGTTTTGTGGACCCGAGGGCACGTTTAAGgttggtttttaaatgtacctcACTTTAATCCATCTCCATTCAATCATGCCATCCTTTTATGTGTCAGAGGCTTCCATTCCAGACACAATCATTGTAATGTTCCTTCAATGCGTTCCCTTACTGTGTATAAACCAATCCTGTTTTTctagatttaatttgattttttaagAACTTTTTTAAGATTTTGTTGAAAGGCCTTCCTCCCTTTCTAGGGAGATCATGACTGTTACCAATCAGAAACCAAAGGATACTTTGATCGGTATCTTAACCCCAGGAAAGAAGAACACCAAGGAAAcccttaaaataaacacacattggtaaaaacattcaaaagatGCAAATATTATGGCAGTGTTTGGCCCAATCAAGgcaatatattgtattcaaaatgCTGACAACTGCCATCAgcttatatttttccttttctttttttaatgaatgtttcTATTGTGTGCCTGTGTTGCGAATGCTGTTTTACTGGATATTTGATGAATTCTGTGAAACCTTAGTAtccgtttaaaaaaaatgttgcttgaaagatgtttttatgtgtttctaCTGCCATGTAGAATCTGTTCCTGTTGTGAATACAAAAGCAGCATGTCGGAATCATTGTATACCTGCTGATGTTTCTTGAGGcctgctttcatttcatttcttagGACTTACTTGCGTTATTAGTCTAGTGTAATTAGCCCACATTAATCTTTAAAAGGTCATTGTTGAATAGAAAACCCTATACAAGAATATCAGCAAAAATATTCTTTATATAGGTAATATGAAATAGATTACACTGCAGAAATATCCCCgtatttaatctgaattatGGTATCTAAAGAAAATGCTTGTTTAGCTGTGAGCAAAGACTATATTACAGCTGTaaagaattaatttaattcctgaaaatatgtacataaatatatctatataaaataagttttaatgtTAAACCTATCAAAtgataacaatttatttttaagtgttcttttttaatatacctTTTGTGTTTGATAAGGCACTCTCTTAAGTGCATACATTCGCCTATGCATGGCCTCAAGTTACTTAATTCAGCACTAAAtagttgttttccttttgcttAAGAGTAAGAGAATTACTGCTGCTTTTGTTGTCCACCGTTCAGAATGTTGcctgaggaaaataataataataataataataataataataataataataataatggcacaGTTTATATATGACTACACTTGAATtcttcaaatgtgttaaaaaaaaaggctgacCAATGATATGATGCTGTACATTTCGAAACTTACTCTGCTTTGACGATAATGAATGTGAAATATACCTCTAGAAAGTGCATCCTCACAATATCAGAGGATTCTcactttatttaatgtgttttgacaAATCAAATGACATTTCCTTATATTATAGTAATCAAGAAGACagccaattatttttgttataagGTGCATGTcattttggaaaagaaaaaaagaaaaacgataCCAAAGTTTCTTTATTGAAGGAATAAAGTATGAATAATGCCTACGTGGTATTCCCTGTTACtccaaaaacataaatgcaaatggTTCAGCACGCAGATATTTAACACTGCTCTAGAACCTGTATGTTGGCATGCATTGAAGTCAATCTGCAAAGTGCACTGCAAAGCAACAAACTAAGCAACAGCACAAACCAAATGAATTCTGTGACTGTTGATTTGGCATTTTCtatgctatatatacacattcacaaAACATCTCAGGATGAAGAACTATACTCAGGGAAGATACCAGGAAAGTGTACTTTTTCTTTACAGAATAGTTTGCAAACTTCTTTAATGTACTCTGATCAAGCAAAATAGAATTAGTGTTTAATATCTATATGTTTTATGTACTGATATTAGTAACTACCTCTGAGTTATACATAGTCATACATTTCTGATAATCTGAtgacttttttgtattttacttcatATAAACGTAACTGTAGAATTGTATTGTACTGAAAGCTTGTGTAAACATCAGTTTTCTCTTACATGACTTTTACACAGGTGAagatttttatactgttttaaagATGGTAATATGACGGTAATCTCAGTTTTCTGTTTACAGCAAAAGCCTACCTCATTCTTTCTGTTTGGTAAACCTTGATGCTCGGGGGGCTAAAGATTATTTGGTAGAATCTGATAAATATGTAAGATTTCAAACTGCAATTTTATGAACAAAACAAGTGTGCTGTCcttgattttcattttgaagatgtGCATATCAGTGAAAGTGGATCACTTGTGAACACGAATGTCTAGCCCTGATTTGGAAAATTCCGGATATAAACATCAAACATGAGTgatcagagattttttttttaaagcactgatgCTGAATCCAGGTCCCAAAGGGACCTTACATTGAATCCACAATGGACTATGCCTTTTGGACAGTGGCAGTTCAGAccaattatgtaaataattcaTAAGTCATTTAGACATTAGGTTGATTGAAAAACAGATGACACTGCTGCCGTTTAGGATCAAGAGGGCATATCACTAAAATAAGCCTTATGAGTCTCTGAACTGCAGACCAGAAATGAGTCCTTGATTCTGCAAACCCGAATGGactgcagtttgtgtttgtgtttacagtgtTGCTCCAGAGTTGGACTGTAGATGTGGGAAATATTGATCTCATATCAGAACATCAGTTTAGAGATTCTCACTACCCAAGATGCATTGAGAATGATTGATGAAGTCACCCTGGTAGGAATTACttgaactttgttttttaatggcttAACAATCAAAAGTAGTGTTTCACCAAGTATTGCTGAAACTTGACAGTCTAGGAGCAAATATGCCCAAACAGCACATTAAGGACTCATAGTTTAAACCAAGAATCTGCTGAGCATTCAAGGAATATAACATTGTTTGattcttttatttctgtttttttttctactattGGTATTTCTTGTCTCTCTTGTGGAATCAGCCACATTTGTATTCAGGCAAGAAGGAGTATTTTAAACAATCTGCATACAGAGGTCAATTTCCATTCAGACATGATGTTCATCAGATACAAAATGTAGGCATGTGAAGATATTTGTTAAACAATTGTGCATACATGTGGCATTATTAGCAagagattttgtattaaaatatttaaatggcatATATAGAGATCTCATTTTAAGACGTTTATAAACCTATGTTTTCTTCCGTTTAATTTAAACCCTTTAAATTCACtggttttgtaatatttcacaaatgtaaatgaaaagctTACTGCAGCttgtttacattaaatgtgtaattgaacATACAATGAAGCTCTCCACTATGGTATGAAATGTTAATTCCCgatgaatacaatacaatttctCTGATCAATATAactactgatttttttttctcctcttttctttctttagcaGAAAAATACAGGGATACGGTATTTATCAAATCACCACTAGATGCATTTAACAATGTAATGAAGACCACAAACTACTAGGGCTACCTCATGGTTTAAAACATACAGGGCTCTATTTGGCAATGTGTGCAAAGCCCAAACTGCCAGGTGTTGAAATAGATGCACAGGACTGTCCTGCCTGGCATGTGTGTGGAGTAATGTGGCAACGCATCCACagatgtgagtgtgtgagtttCATCTTGCATGTGAAAAGCCGCTCTAAACTGCGCACAAATGACAATATCACCATAGAAACGGTGAGCAAAGCAGTGAAAgacacaaaaagagagagagagagagagagagagagagaacaaacatAGGCTCACATTTTTAAGTATGCACTGGAAATGTTCCTGGTTACAAAGATGATAACTGGATTTGGAATATACCTTTGTTTTTTGGATCTCTCTGACAAGCTAatatatgttattgtttttattgtattgactATAGCTTaatctcaaaatgtattaatatattttagggAAAAAAAGGTGTTTGTTGGGTTAGTAATATAGAATAagtagtgtatttatttatttttattaatttgcgGTTCCCCATCTTCCCAGAGATTTCTGTACAATGATTTTGTGGAATACCCCCTCTGCATTCATACAGTATAACCCTAGGGCACTTAATAACTAAAAAGGAGTAGAGACCagtacatgttaaatatatatatatatttatcctttTAAATTGTTGAATTGGGATTGCAgtaataaaactatatacaccgatcagccataacattatgaccacctgcctaatattgtgcagGTCCCCTTTTtactgccaaaacagccctgacccgtcgaggcctggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggagaccaagacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggtgctttcggcagtggacaggggtcagcatgggcatggccaccctgactggtctgcggctacgcagccacatacgcaacaaactgtgatgcactgtgtgttctgacaccttNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5870 lncRNA upstream 284704 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 285921 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 478329 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 780122 27282004 ~ 27282241 (+) True G4787
TU5732 lncRNA upstream 1410796 26651285 ~ 26651567 (+) True G4694
TU5905 lncRNA downstream 999 28104210 ~ 28105707 (+) True G4837
TU5991 lncRNA downstream 295652 28398863 ~ 28399688 (+) False AMCG00003988
TU6005 lncRNA downstream 351222 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 363706 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 464973 28568184 ~ 28576934 (+) False AMCG00003991
AMCG00003973 mRNA upstream 556214 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003972 mRNA upstream 612469 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003977 mRNA upstream 680361 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003971 mRNA upstream 1182498 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003969 mRNA upstream 1307948 26721890 ~ 26754415 (+) True AMCG00003969
AMCG00003983 mRNA downstream 156485 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003985 mRNA downstream 251304 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003989 mRNA downstream 269935 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003988 mRNA downstream 276600 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003990 mRNA downstream 351208 28454419 ~ 28465646 (+) True AMCG00003990
TU5497 other upstream 2266572 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3378443 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4349229 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 6138576 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 6301733 21745850 ~ 21760630 (+) True G3771
TU6431 other downstream 2167999 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2784784 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 5026909 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6749652 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7649322 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile