RNA id: TU6278


Basic Information

Item Value
RNA id TU6278
length 1317
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G5129
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29684227 ~ 29685543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGAAGAGAAAAGACAGTTGTAATTAATTAGCTCAACATTTCTGCGAATTCTTTGACACAAAGCAAGTGTCTGTGAGGGGATTAAGGTGAGTCGGTTTACTCCACATTTTTCGCTCACGTACATGTcctttacatgtatataaagGCTCGCTTTGATCAATGGTTCCACTTATAAACAACGAATACAAGTTGTTGAGGGATTTCGATTTCTCCTCTCTTGAGCTCTGAGGATTCCCTTCCGGTGGCTTGTGCCTGTAGACTTGGATTCCTAGCCATGCTCTCCAGATAAGCTGCTCAGCATTTATCTTTACACTGCTGTTCCCTAACCATGACCAATGACCACTTCCTGACACCAAAGAGGTTTGACCTAGTTCGATCCCCCCTCACAGATCAGGAAATGAAGATGTTAGAAATAAGACCTAACAGAAACAGCcaggaatttgtatttttctactcCCAGATGCATCTGTACATGTTTTGGTCAGTTACACTCAATATTTGCCTACTTTTCTTAACTGTTACTGACCCTCAAATCCTGTGTCTAGTACTAGTtctgttttaattcaattactTCTCGTGTGGGTAGCaatcagccacatcactgggccATGTAGTCTGCACTCTGATTAGGTGAGGGTGAGATGCTGTCAAGGGATCTCCACGGCAACAGTAACTTAGAGGACATTAGCATAATTGCATCACTGGAGAGGATGGGGGTGGTGGTGTTGCAGTGCACCTGAAAGAGCCCTGACTATGTTCCTAAAAAAAATGGCTACAGGATTTAATTGCATAGCAGCCGTAGGATTTTGCATTTATCCTTTTAATATGGTAAGATATTAACTTAGACAGTGTGATATGGCCCATCTCCAGCCCTTTTCATCACATCGTTAAGCTTTTGGGTTTACAATTAAATCAGGGAAACAAGTATTCTTTAACTTTTTCTTAtagcagaaataataattaaaaaatgttcgATAATCATCAAAAATGTTTGGTAAAAATTGCAGCAGATGATATCAGGAAATATTTACAGTAACTATCATTCCTTATTTATGAGAGAATTTTTGAACTGGAAACGTGTAAAACATGAATGAGTAATAAAACCTTGTTTTATCATAAATCTCTGCAACTGCACAGTGACTTAAGTGTACAATTAGCAAGAACAATTATACACTGTAAAGAGACATGATACAAATGGCTGATCAAAGTTCAGATGAACTTATAATTAACAATAGCTCATTTACAACTGAATGAACATGAAAGTTTGTGTACTTAAGTGTACCATGTGTAATTAACTTGGCTACATTTGAATGAGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6230 lncRNA upstream 142911 29539213 ~ 29541316 (+) False AMCG00004011
TU6212 lncRNA upstream 322548 29354521 ~ 29361679 (+) True G5085
TU6107 lncRNA upstream 731162 28952553 ~ 28953065 (+) True G5005
TU6083 lncRNA upstream 791196 28892684 ~ 28893031 (+) True G4981
TU6060 lncRNA upstream 1019517 28664502 ~ 28664710 (+) False AMCG00003993
TU6294 lncRNA downstream 12124 29697667 ~ 29699224 (+) True G5141
TU6346 lncRNA downstream 423298 30108841 ~ 30109040 (+) True G5185
TU6352 lncRNA downstream 436552 30122095 ~ 30123181 (+) True G5191
TU6362 lncRNA downstream 460312 30145855 ~ 30146557 (+) True G5198
TU6434 lncRNA downstream 589565 30275108 ~ 30276282 (+) True G5248
AMCG00004013 mRNA upstream 2633 29663803 ~ 29681594 (+) True AMCG00004013
AMCG00004012 mRNA upstream 57709 29613189 ~ 29626518 (+) True AMCG00004012
AMCG00004015 mRNA upstream 72697 29600561 ~ 29611530 (+) True AMCG00004015
AMCG00004017 mRNA upstream 86000 29591603 ~ 29598227 (+) True AMCG00004017
AMCG00004014 mRNA upstream 97076 29581102 ~ 29587151 (+) True AMCG00004014
AMCG00004023 mRNA downstream 298070 29983613 ~ 29998684 (+) True AMCG00004023
AMCG00004027 mRNA downstream 408759 30094302 ~ 30097720 (+) True AMCG00004027
AMCG00004024 mRNA downstream 425543 30111086 ~ 30114969 (+) True AMCG00004024
AMCG00004026 mRNA downstream 445693 30131236 ~ 30137944 (+) True AMCG00004026
AMCG00004025 mRNA downstream 471819 30157362 ~ 30167872 (+) True AMCG00004025
TU5898 other upstream 1581016 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 1616441 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 3888436 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5000307 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5971093 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 585667 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 1202452 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3444577 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 5167320 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 6066990 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile