RNA id: TU6638


Basic Information

Item Value
RNA id TU6638
length 295
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G5417
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30992606 ~ 30992900 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacattagcagcagatcctttaagtcctgtaagttgcgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcatgattcatcagaccaggccaccttcttccattgctccgtggtccagttctgatgctcacgtgcccattgtaggcgcttttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6495 lncRNA upstream 214336 30778047 ~ 30778270 (+) True G5297
TU6489 lncRNA upstream 251733 30740564 ~ 30740873 (+) True G5291
TU6459 lncRNA upstream 439392 30552977 ~ 30553214 (+) True G5272
TU6458 lncRNA upstream 447081 30545287 ~ 30545525 (+) True G5271
TU6440 lncRNA upstream 685431 30296867 ~ 30307175 (+) True AMCG00004039
TU6715 lncRNA downstream 793434 31786334 ~ 31786883 (+) True G5482
TU6723 lncRNA downstream 1036104 32029004 ~ 32029301 (+) True G5490
TU6726 lncRNA downstream 1198420 32191320 ~ 32191542 (+) True G5493
TU6733 lncRNA downstream 1275848 32268748 ~ 32269071 (+) True G5499
TU6735 lncRNA downstream 1316605 32309505 ~ 32309912 (+) True G5501
AMCG00004065 mRNA upstream 2506 30974976 ~ 30990100 (+) True AMCG00004065
AMCG00004057 mRNA upstream 23402 30961633 ~ 30969204 (+) True AMCG00004057
AMCG00004064 mRNA upstream 45129 30945472 ~ 30947477 (+) True AMCG00004064
AMCG00004058 mRNA upstream 64115 30924788 ~ 30928491 (+) True AMCG00004058
AMCG00004059 mRNA upstream 79455 30897076 ~ 30913151 (+) True AMCG00004059
AMCG00004067 mRNA downstream 37518 31030418 ~ 31039737 (+) True AMCG00004067
AMCG00004066 mRNA downstream 54245 31047145 ~ 31062709 (+) True AMCG00004066
AMCG00004071 mRNA downstream 377482 31370382 ~ 31371158 (+) True AMCG00004071
AMCG00004078 mRNA downstream 1312591 32305491 ~ 32329172 (+) True AMCG00004078
AMCG00004075 mRNA downstream 1342492 32335392 ~ 32346595 (+) True AMCG00004075
TU6554 other upstream 97779 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 721082 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2889395 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2924820 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 5196815 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 2137220 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 3859963 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 4759633 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5279292 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 5781101 36774001 ~ 36774523 (+) True G6314

Expression Profile