RNA id: TU6771


Basic Information

Item Value
RNA id TU6771
length 271
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G5527
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32383409 ~ 32383679 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gataatattcagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggcattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagatgaagtaacgcatgagaaagacctaggagtctatgtggactcctcactttctccatccaaacaatgtggggaagcaataaaaaaggcaaacaggatgttagggtatattgtcaaaagtgtagaattgagaacaagggcagtaatgttca

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6760 lncRNA upstream 33306 32348390 ~ 32350103 (+) True G5522
TU6735 lncRNA upstream 73497 32309505 ~ 32309912 (+) True G5501
TU6733 lncRNA upstream 114338 32268748 ~ 32269071 (+) True G5499
TU6726 lncRNA upstream 191867 32191320 ~ 32191542 (+) True G5493
TU6723 lncRNA upstream 354108 32029004 ~ 32029301 (+) True G5490
TU6773 lncRNA downstream 756 32384435 ~ 32387535 (+) True G5529
TU6774 lncRNA downstream 16726 32400405 ~ 32402383 (+) True AMCG00004079
TU6819 lncRNA downstream 228154 32611833 ~ 32612051 (+) True G5569
TU6947 lncRNA downstream 1054649 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 1089357 33473036 ~ 33473330 (+) True G5680
AMCG00004075 mRNA upstream 36814 32335392 ~ 32346595 (+) True AMCG00004075
AMCG00004078 mRNA upstream 54237 32305491 ~ 32329172 (+) True AMCG00004078
AMCG00004071 mRNA upstream 1012251 31370382 ~ 31371158 (+) True AMCG00004071
AMCG00004066 mRNA upstream 1320700 31047145 ~ 31062709 (+) True AMCG00004066
AMCG00004067 mRNA upstream 1343672 31030418 ~ 31039737 (+) True AMCG00004067
AMCG00004079 mRNA downstream 16867 32400546 ~ 32402338 (+) False AMCG00004079
AMCG00004080 mRNA downstream 44780 32428459 ~ 32428913 (+) True AMCG00004080
AMCG00004083 mRNA downstream 65728 32449407 ~ 32455846 (+) True AMCG00004083
AMCG00004081 mRNA downstream 115794 32499473 ~ 32529839 (+) True AMCG00004081
AMCG00004082 mRNA downstream 175300 32558979 ~ 32559365 (+) True AMCG00004082
TU6554 other upstream 1488582 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2111885 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4280198 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4315623 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 6587618 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 746441 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2469184 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 3368854 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3888513 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 4390322 36774001 ~ 36774523 (+) True G6314

Expression Profile