RNA id: TU6773


Basic Information

Item Value
RNA id TU6773
length 1652
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G5529
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32384435 ~ 32387535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAGTGTTGCAGCGCCGGGCTCGTGTGCGTCAATGTGACACTGAAGCCTCgtctttcaaaatgttcctCACAGCCGCGAATTTGGCCAAGGCCAAATCCAAGACAGTCCTGGTTCAGATGCTGAGTGCTGCTGGGACCGGGTTCAGTTTCAATACCAAGAGGAACCGGCTGCGTGAGAAACTAGTGTTGCGTAAACACGACCCCATAGTGAACAAGCACGTCCTTTTCTTTGAGAAGAAGAAGATTCGATCCATTTAAAGATTGGTGGAAAAAGGAAACGGCTGTCTAGGTGGACTTGACTCAATCCAGCATGGATCTAGACAAAAGACATTCAGATATTTATATCCAGAGAGGCTAACTGGTGATCGTTGCTCTTTTCACTCCCATCTACTGCAGTGTGCCCCCAGTTAATCGAAGAAGTGAAGAGTTTTCTTTGAAATGGGGACATAAATTTGTGGATAGCAGACCAGTTATCGATGAAGAGAATGCAAGACTGGGGTGGGATATGTGAAGGGGAGGGGGGTccttgcaaaataaatgatctgGACAATGCACGTGTCATTTCAGGATCAATATGAATCTAGTTTATTTACATCCAGCACTCTGATCCAAAATCCAGAAATTAAATTACTGCGGGAATTTCCGAAATTGCTCATATCCCTACTTGCATAAGAAAAgtaatgtttgttgtttttttatgctcGTATCCATTGGTGATTTTGTACACATTCACCCACATCAGCATCTGTAACCTCATGTAGTGAAAAGTCATTTTCCCAAAAAggacaaagagaaaaataacaatagtcTTTCTTAAGatgttattttgaaacaatttcTGTTAGTGTATATTGACATAAGCCAAGGTGATGAAATGGTGTAATTAATCATTCCCTTGTTTCAGTAGTTAAAGTTCTGTTACACACATTGTTGATTACACAGTTGTGTGCAATCTCAAATCTGTCATTAATTCAGGTATCTTGGGGTAGAACAAACATTGTGATAGTAGCAAATAAACATCAAGTTGGTTTCATTAGGGCtggagtgtgtcagtgtgtaataaatattataatttagaCTGGGGGTGTGTTGATTTTGCTCTGCCCCCCTAAAGAACTTTTACTGTGGCAGtcaaatgtttatatgtatttgttcaagGGGAtccttaaattattattattgtttgtttcatagGAGTCAGAAATCATACTAACATGGTAGTGTGTAAACCATCCTGTTAAATATAATGATTCCCTCACTGAGGAACAGCTAGTGCGATAAGAGCCCCAGTGCAGACGGACCGTGGGAGGTTGAGACTGATGTTCAACGTCCTGCATTTGCCCCCTtcgttaagaacataagaaagtttgcaaacaagaggaggccatttgaccatCGTGTTCGTTTGGTCTCCTGCCATGACCCGGATTCGAACCAGGGTTGTTGTGGCCACAACACAAAGTACTAACCACTATACTATCACAGCAAACTACCAGGGAGATTATAGTGACTAACTGCTGTGAAACTATTTCCTGATGTTTGGATTGCAAAAATGCCAGTATtgatgacaaaacagaagtctgATGATGAAATGTATGTTAcgatataaatatgtaatttcaaTAATACACCCCTACTGGTCCTGTCCAC

Function

GO:

id name namespace
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0022900 electron transport chain biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6771 lncRNA upstream 756 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 34332 32348390 ~ 32350103 (+) True G5522
TU6735 lncRNA upstream 74523 32309505 ~ 32309912 (+) True G5501
TU6733 lncRNA upstream 115364 32268748 ~ 32269071 (+) True G5499
TU6726 lncRNA upstream 192893 32191320 ~ 32191542 (+) True G5493
TU6774 lncRNA downstream 12870 32400405 ~ 32402383 (+) True AMCG00004079
TU6819 lncRNA downstream 224298 32611833 ~ 32612051 (+) True G5569
TU6947 lncRNA downstream 1050793 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 1085501 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 1087307 33474842 ~ 33475047 (+) True G5681
AMCG00004075 mRNA upstream 37840 32335392 ~ 32346595 (+) True AMCG00004075
AMCG00004078 mRNA upstream 55263 32305491 ~ 32329172 (+) True AMCG00004078
AMCG00004071 mRNA upstream 1013277 31370382 ~ 31371158 (+) True AMCG00004071
AMCG00004066 mRNA upstream 1321726 31047145 ~ 31062709 (+) True AMCG00004066
AMCG00004067 mRNA upstream 1344698 31030418 ~ 31039737 (+) True AMCG00004067
AMCG00004079 mRNA downstream 13011 32400546 ~ 32402338 (+) False AMCG00004079
AMCG00004080 mRNA downstream 40924 32428459 ~ 32428913 (+) True AMCG00004080
AMCG00004083 mRNA downstream 61872 32449407 ~ 32455846 (+) True AMCG00004083
AMCG00004081 mRNA downstream 111938 32499473 ~ 32529839 (+) True AMCG00004081
AMCG00004082 mRNA downstream 171444 32558979 ~ 32559365 (+) True AMCG00004082
TU6554 other upstream 1489608 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2112911 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4281224 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4316649 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 6588644 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 742585 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2465328 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 3364998 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3884657 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 4386466 36774001 ~ 36774523 (+) True G6314

Expression Profile