RNA id: TU6819


Basic Information

Item Value
RNA id TU6819
length 219
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G5569
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32611833 ~ 32612051 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTTCAAGGTGGGGTCATATAAGCCCAGCTGGAGCTTTGCTTTGAAGTACGGTGGGATCCTTAGCTGCACTGAAAAGTGCcacataaaattaaattatgttgctTCTTTTGAAGTGCTCCCTTGTCAGGCCCTGCCACAGCTAGTGAGCAGGCCTGTGACACCCCCCGACCATAGAGAACAGGGGAACGTAGAGGAACACTGCCCTCTGGACATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6774 lncRNA upstream 209450 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 224298 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 228154 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 261730 32348390 ~ 32350103 (+) True G5522
TU6735 lncRNA upstream 301921 32309505 ~ 32309912 (+) True G5501
TU6947 lncRNA downstream 826277 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 860985 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 862791 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 954122 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 985841 33597892 ~ 33600011 (+) True G5707
AMCG00004085 mRNA upstream 11241 32598453 ~ 32600592 (+) True AMCG00004085
AMCG00004084 mRNA upstream 15432 32583540 ~ 32596401 (+) True AMCG00004084
AMCG00004086 mRNA upstream 29134 32571579 ~ 32582699 (+) True AMCG00004086
AMCG00004082 mRNA upstream 52468 32558979 ~ 32559365 (+) True AMCG00004082
AMCG00004081 mRNA upstream 81994 32499473 ~ 32529839 (+) True AMCG00004081
AMCG00004087 mRNA downstream 116609 32728660 ~ 32774812 (+) True AMCG00004087
AMCG00004089 mRNA downstream 202692 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004088 mRNA downstream 226913 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004093 mRNA downstream 264759 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004092 mRNA downstream 325354 32937405 ~ 32946916 (+) True AMCG00004092
TU6554 other upstream 1717006 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2340309 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4508622 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4544047 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 6816042 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 518069 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2240812 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 3140482 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3660141 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 4161950 36774001 ~ 36774523 (+) True G6314

Expression Profile