RNA id: TU7645



Basic Information


Item Value
RNA id TU7645
length 520
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G6247
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36565570 ~ 36593153 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atacactgatcagccataacattatgaccacctgcctaatattgtgtagGTCCCCCTTtcgccaccaaaacagccctgacccatcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgtgaggtggggcctccatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaacttgtgattcatcagaccaggccaccttcctccattgctccgtgttccagttctgatgctcacgtgcccattgtaggtgctctcggcagtggacaggggtcagcatgggcaccctgactggtctgcggctacgcagccccatacgcaacaaactgcgatgcactgtgtgttctgacacctttctatcagaaccagcatgaactttttcagcaatttgagctacagtagctcgtgtgttggat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7640 lncRNA upstream 8239 36556106 ~ 36557331 (+) True G6242
TU7638 lncRNA upstream 10462 36553904 ~ 36555108 (+) True G6240
TU7622 lncRNA upstream 26503 36526668 ~ 36539067 (+) True G6225
TU7620 lncRNA upstream 44976 36495840 ~ 36520594 (+) True G6224
TU7487 lncRNA upstream 399700 36161606 ~ 36165870 (+) True G6102
TU7650 lncRNA downstream 46507 36639660 ~ 36643702 (+) True G6252
TU7678 lncRNA downstream 94477 36687630 ~ 36697885 (+) False AMCG00004179
TU7672 lncRNA downstream 96229 36689382 ~ 36690702 (+) False AMCG00004179
TU7673 lncRNA downstream 96229 36689382 ~ 36697885 (+) True AMCG00004179
TU7677 lncRNA downstream 96229 36689382 ~ 36691243 (+) False AMCG00004179
AMCG00004174 mRNA upstream 63454 36501826 ~ 36502116 (+) True AMCG00004174
AMCG00004173 mRNA upstream 96546 36454991 ~ 36469024 (+) True AMCG00004173
AMCG00004170 mRNA upstream 175058 36348573 ~ 36390512 (+) True AMCG00004170
AMCG00004167 mRNA upstream 287336 36261788 ~ 36278234 (+) True AMCG00004167
AMCG00004166 mRNA upstream 312672 36237806 ~ 36252898 (+) True AMCG00004166
AMCG00004176 mRNA downstream 70649 36663802 ~ 36669648 (+) True AMCG00004176
AMCG00004179 mRNA downstream 96227 36689380 ~ 36690284 (+) False AMCG00004179
AMCG00004180 mRNA downstream 149474 36742627 ~ 36746065 (+) True AMCG00004180
AMCG00004186 mRNA downstream 155703 36748856 ~ 36765206 (+) True AMCG00004186
AMCG00004187 mRNA downstream 197281 36790434 ~ 36873869 (+) True AMCG00004187
TU7524 other upstream 290640 36272192 ~ 36274930 (+) False AMCG00004167
TU7437 other upstream 799390 35752533 ~ 35766180 (+) True AMCG00004158
TU7209 other upstream 1695250 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 3434384 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 5670743 30887995 ~ 30894827 (+) True AMCG00004056
TU7741 other downstream 180848 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 268394 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 406204 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 4866423 41459576 ~ 41507231 (+) True G7094
TU8899 other downstream 5619357 42212510 ~ 42216362 (+) False AMCG00004304

Expression Profile