RNA id: AMCG00005376


Basic Information

Item Value
RNA id AMCG00005376
length 2138
RNA type mRNA
GC content 0.57
exon number 9
gene id AMCG00005376
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22200185 ~ 22211145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCACACACTACTGCACAATGTCTACACTAACTACACACTACTGCACAAAGTAAACTAACCACACGCTACTGCACAGTCTACTCTAACCACACACTACTGCACAGTGTCTACTCTAACCACACACTACTGCACAATGTCTACACTAACTACACACTACTGCACAAAGTCTACACTAACTACACGCTACTGCACAATGTCTACACTAACTACACGCTACTGCACAATGTCTACACTAACCACACACTACTACACAGTGTCTACACTAACCACACACTACTGCACAGTGTCTACTCTAACCACACACTACTGCACAATGTCTACACTAACTACACACTACTGCACAAAGTACACTAACCACACGCTACTGCACAATGTCTACACTAACCACACTATATCCTATTGGTTGGTTCCCTCCCTCCACCTTTCCCCCGAAACAAGTTCGTTTTAGGAGGTTTTCAAGGTCGAGGGAAACACAAACACGCTGGGATTGACTGGCATTCctgtcaaatgtgttaatttttAATCTCGCCCTGTCCAGCTGCCCCCTGTCCCACtaagacaacacacacactcatcagAAGGGACCGGGTGCTGAGAGCAGAGAGTGGCATGGGGACCAGGCCTGAGCCGGACGCTCGCCCACCGCCCCGCGCCGCCCGGAGAGCCACCGCAGCGGGCAGAGCGACAGGAGCCGCGCCGGGACGGAGATCCGCAGACCGGtcgGTCCCTGCCACCTGCATGTCTTCCCGTCTGAAGTACGTGTCTCTGGGCGTCCTGGTGTTCCAGACCACCAGCCTGGTCCTGACGATGCGCTACTCGCGGACGCTGCAGGGGGACGGCCCACGCTACCTGGCCTCCTCCGCAGTGGTCTCCGCCGAGCTGCTGAAGATCGCCGCCTGCGTCCTCCTGGTCTTCAAGGAGCACAGCTACAGTGCTCGTGCCCTGAACCGTGTGCTGAGTGATGAGATCCTGAACAAGCCACTGGACACGCTGAAGCTGGCCATCCCCTCGGGCATCTACACGCTGCAGAACAACCTGCTGTACGTGGCGCTCTCCAACCTGGACGCCGCCACCTACCAGGTGACGTACCAGCTGAAGATCCTGACCACGGCGCTGTTCTCCGTCGCCATGCTGGGCCGGCGCCTCAATGTGTACCAGTGGCTCTCGCTGCTCATCCTGATGGCGGGGGTGGCCCTCGTGCAGTGGCCCTCAGAGGCCCCGGGCGTGGAACAGCAGAAGGAGCTGTCTGCCGGCTCTCAGCTGGTGGGCGTTGGGGCAGTGCTGGTGGCCTGCTGCTCCAGCGGCTTCGCGGGCGTCTACTTCGAGAAGATCCTCAAGGAGACCAAGCAGAGCGGCTGTTCGGCGCCGTGTTCGGGCTCATGGGGATGTGGCGTGTTCTTCCTCGGCGCCATCCTGGTTATCGCTGCCACCTTCCTGTACGGCTACGAGGGCAAGCCGGCCGCCAACCCCAGCCGCGCGTAGAGAGGGCAGGTGGATGGGCGGCGGGCAGGCGGGCAGGTGTGCGGGGGGGGACCTGTGcggagagcaggaggaggacACCCCCAGACAGTGGGTCCACCCCACCTGGACATGAGACCGGCCGACCCACTTGCTGTGTCTGAGCCGAAAATGAACTGTACCCCCCACCACGGGGGGCCGAAAGACTCCAGCGCAGACACCGTCcatctgccccccccccctcttccgCAAGTCCGTCTTGCAGAGTGTTTAaatggtggtgggggtggggggaggggggtctaTATGCAGGTCAACTTtttgggaaattattattttattgttattatttattttttttatttgggagAACCAGGTCAGTCAGTCTGTATCGGACCCCCCCGCTCTCCTTGTCTGTAGTGAATCATTATAATAAGGCAGGCGAGGGGGGGGCAGAATGAGCTTTACACCGAAAACAAGGTGTTGCTCAActgactggggggggggggtccggTCCCTCGGCGCCGGTACTGGGGGCAGAACGGGCCGGACGGATGGTGCCAAGTGGCCCGAACACGACTGGGGTTATTAAGAGTTCAAAtcatgtcatattttatttgattgtattaatattagttattatttgggaggggggttgtgttgttttattgccaAGTC

Function

GO: NA

KEGG:

id description
K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185037 lncRNA upstream 112841 22081644 ~ 22087344 (+) True G147066
TU184988 lncRNA upstream 243140 21956601 ~ 21957045 (+) True G147027
TU184985 lncRNA upstream 249598 21950328 ~ 21950587 (+) True G147024
TU184983 lncRNA upstream 251567 21948086 ~ 21948618 (+) True G147022
TU184849 lncRNA upstream 454734 21744879 ~ 21745451 (+) True G146928
AMCG00005378 mRNA upstream 1444 22181664 ~ 22198741 (+) True AMCG00005378
AMCG00005381 mRNA upstream 21809 22175486 ~ 22178376 (+) True AMCG00005381
AMCG00005365 mRNA upstream 54575 22132565 ~ 22145610 (+) True AMCG00005365
AMCG00005370 mRNA upstream 67703 22130285 ~ 22132482 (+) True AMCG00005370
AMCG00005366 mRNA upstream 69936 22123782 ~ 22130249 (+) True AMCG00005366
AMCG00005377 mRNA downstream 13427 22224572 ~ 22229979 (+) True AMCG00005377
AMCG00005379 mRNA downstream 33159 22244304 ~ 22245551 (+) True AMCG00005379
AMCG00005380 mRNA downstream 48960 22260105 ~ 22261178 (+) True AMCG00005380
AMCG00005371 mRNA downstream 211844 22422989 ~ 22429677 (+) True AMCG00005371
AMCG00005372 mRNA downstream 218968 22430113 ~ 22435540 (+) True AMCG00005372
TU185050 other upstream 55352 22139187 ~ 22144833 (+) False AMCG00005365
TU185051 other upstream 55352 22139187 ~ 22144833 (+) False AMCG00005365
TU184992 other upstream 216041 21957440 ~ 21984144 (+) True G147029
TU184996 other upstream 230493 21968302 ~ 21969692 (+) False AMCG00005351
TU184986 other upstream 247303 21952569 ~ 21952882 (+) True G147025

Expression Profile