RNA id: AMCG00005377


Basic Information

Item Value
RNA id AMCG00005377
length 1663
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00005377
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22224572 ~ 22229979 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTTCCGTATCAGCCGTGTTCGCGCCCGCCCCCTGCTGGAGATCCAGCAGTACTGCGTGTCTGTGCTGTCCGAGGTGGCACCGATATCCTTTATGGCAGGAGCTCTGGGGCCACACAGGCCTGTCCCGACACTGGCTGGCCAGcagcTCTGCCGCCACTCCGGAGTCGCCGCTCGACCTCGGTTTATGCTTTTCCGCCTGCTGAGCTCTGTGTCCCGCAAGGCGTCCTCCGTGCTGTTCCGAGCGCCCGTCGCCATGAAGCCCCAGGTCGTGTTCGTGCTGGGCGGCCCCGGCGCCGGGAAGGGAACCCAGTGCGCCAAAATCGTGGAGacctATGGCTACACCCACCTCTCCGCGGGGGACCTGCTCCGTGCCGAGCGCGCACGGCCAGACTCCAAGGATGGTCAGCTGATCGAGAGCTACATCAAGGAGGGCAAGATCGTCCCTGTGGAGATCACCATCAACCTGCTGAGGAaggtgtgtgtctgcctgtgtgatgcctgtgtgtctgtctctcatgACCCCCTTGACctgctgacccctgacccccagGCCATGGAGGAGACCATGCGGCAGGACCAGGAGAAGTTCCGCTTCCTGATCGACGGCTTCCCGCGCAACGAGGACAACCTGCAGGGCTGGACTAGCGCCATGCGGGAGCGGGCGGACGTGCGCTTCGTGCTGTTCTTCGACTGCAGCAACCAGGTGTGCATCGATCGCTGTCTGGAGCGCGGCAAGAGCAGTGGCCGCACCGACGACAATCGCGAGAGCCTGGAGAAACGGATTCAGACCTACCTGCAGTCCACCAGGCCCATCATCGACCTGTACATGAAGCAGGGCAAGGTGCGCACCGTGGATGCCTCCAGGGGTGTCGAAGAGGTGTTCAGTGATGTTCGGAAGGTGCTGGACCAGGAGGTGTAGAGATGACAGGACGCCGCCGGCTCCCCCACAGGAACACGCACTTCTGCTTCTTTTAAAACGACAGCAACACAAAAACTGACACTCGAGAAAACAGAAACACCCCACCTTGTATCTATATCATTATTATcgttattgttatcattattatttcctttttttactgGCTCGGATggctctgtttttaaatgtcgtGTGCTTCAGTGTGGATGTGCGTCTGCTGTCCCCTGCTGGCGCTCAAACAGACACTGACTGCCGCTTCCTGCTGGGGAGAGCCGGGGCGGTGCTCGTGGTGTCAGCCCGGCCCGGCATGTTTTGGCGGAGAGTCCGACTCGGCGGGAGCGCAGCGTCGCGGATTAgggttttgtttaatctgttttactgttgttcctttttgtgttttttgtcctCCAACAGCTCctcccagacacacacagaggtggGGGGTGCGGTCGGGCTGAGCCCCCCCCACACTGACCGCACTCCCCACCTCTGTCAGGGGGTTTATCATTCCACCCGAATCGAATCTCCCGGGGTTCTGTCTAATGCAGGTGACGGTTTCATTTTAACAGCTCTGTGAAATAAAgcagacccccccccccggccccgTGTCTCTGTAGCGCCCCCCTCTGTACCCGTGTGTTTTTCCATGTTGTCTTGATGAAACGTTTCAAAGGACCAGTGTGTTTGACTTGAAAGGCtccttctgtttttaaatgaacacgGAGATGAATTACACTTG

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0006221 pyrimidine nucleotide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K13800 CMPK1, UMPK; UMP-CMP kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185037 lncRNA upstream 137228 22081644 ~ 22087344 (+) True G147066
TU184988 lncRNA upstream 267527 21956601 ~ 21957045 (+) True G147027
TU184985 lncRNA upstream 273985 21950328 ~ 21950587 (+) True G147024
TU184983 lncRNA upstream 275954 21948086 ~ 21948618 (+) True G147022
TU184849 lncRNA upstream 479121 21744879 ~ 21745451 (+) True G146928
AMCG00005376 mRNA upstream 13427 22200185 ~ 22211145 (+) True AMCG00005376
AMCG00005378 mRNA upstream 25831 22181664 ~ 22198741 (+) True AMCG00005378
AMCG00005381 mRNA upstream 46196 22175486 ~ 22178376 (+) True AMCG00005381
AMCG00005365 mRNA upstream 78962 22132565 ~ 22145610 (+) True AMCG00005365
AMCG00005370 mRNA upstream 92090 22130285 ~ 22132482 (+) True AMCG00005370
AMCG00005379 mRNA downstream 14325 22244304 ~ 22245551 (+) True AMCG00005379
AMCG00005380 mRNA downstream 30126 22260105 ~ 22261178 (+) True AMCG00005380
AMCG00005371 mRNA downstream 193010 22422989 ~ 22429677 (+) True AMCG00005371
AMCG00005372 mRNA downstream 200134 22430113 ~ 22435540 (+) True AMCG00005372
TU185050 other upstream 79739 22139187 ~ 22144833 (+) False AMCG00005365
TU185051 other upstream 79739 22139187 ~ 22144833 (+) False AMCG00005365
TU184992 other upstream 240428 21957440 ~ 21984144 (+) True G147029
TU184996 other upstream 254880 21968302 ~ 21969692 (+) False AMCG00005351
TU184986 other upstream 271690 21952569 ~ 21952882 (+) True G147025

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU187257 True 1569 lncRNA 0.49 2 NC_053124.1 35447970 ~ 35498601 (-)
mexican tetra (Astyanax mexicanus) TU187257 True 2102 lncRNA 0.46 6 NC_035912.1 2522526 ~ 2529626 (-)