RNA id: AMCG00005380


Basic Information

Item Value
RNA id AMCG00005380
length 672
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00005380
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22260105 ~ 22261178 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCTAGGGACGGAGATGTCTGACCACTCCGTGCTGTCTGAGGATGTGGATATCGACGTGGTCGGGGACATGAGCGTCTCCAAGGAGGGGACGTACCACGATTTCCACTCGGACAACGACTCGGACGACAACCTGTCTAGGAACGCCGGGGAAGGCGCCCCCTCGCCCGGCCTGAGCGGCTTCCTGCCCGGCTTCGGCTACGGACCCTATGGGTACAATTACAGCCTCCAGCTGCAgaactaccaccaccaccacggcACGGCTTTCCCCTTCCAGCCGCCGCAGTGCTCCCTGCCGGCCCCGGCCTCCATGTTCCCAGCGCCTCACATCCCCTCTCTGCTGGGCACCGAGCTGGCCAGGAAGCCTTTCTACCCGCAGCTCAGTCCGACTCTGCCCGGGCTGCAGCCTCTGAAGGCGGACAGTGGCAGCCAGGCGCGGCCTTCCTTCTCCATAGACAATATCATCGGGGTGGGCGGCGCTGCGAGCACCCCGGCGCCCCCGTACCCCTCCTCGCCGTCGGGCACCCCGGCGCAGATCCTCGCCATGCTCACCCCCGCACTCACGTCCGCCACCAGCCATTTAAACCTGTCACACGAAAACCTGCTGCAGACGCCCGGCGGACAGACTTTCTCCAGTAAAATCTCAGCCCTGAACAgctgtcatttttaa

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0048485 sympathetic nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050935 iridophore differentiation biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001822 kidney development biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0007389 pattern specification process biological_process
GO:0048937 lateral line nerve glial cell development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185037 lncRNA upstream 172761 22081644 ~ 22087344 (+) True G147066
TU184988 lncRNA upstream 303060 21956601 ~ 21957045 (+) True G147027
TU184985 lncRNA upstream 309518 21950328 ~ 21950587 (+) True G147024
TU184983 lncRNA upstream 311487 21948086 ~ 21948618 (+) True G147022
TU184849 lncRNA upstream 514654 21744879 ~ 21745451 (+) True G146928
AMCG00005379 mRNA upstream 14554 22244304 ~ 22245551 (+) True AMCG00005379
AMCG00005377 mRNA upstream 30126 22224572 ~ 22229979 (+) True AMCG00005377
AMCG00005376 mRNA upstream 48960 22200185 ~ 22211145 (+) True AMCG00005376
AMCG00005378 mRNA upstream 61364 22181664 ~ 22198741 (+) True AMCG00005378
AMCG00005381 mRNA upstream 81729 22175486 ~ 22178376 (+) True AMCG00005381
AMCG00005371 mRNA downstream 161811 22422989 ~ 22429677 (+) True AMCG00005371
AMCG00005372 mRNA downstream 168935 22430113 ~ 22435540 (+) True AMCG00005372
TU185050 other upstream 115272 22139187 ~ 22144833 (+) False AMCG00005365
TU185051 other upstream 115272 22139187 ~ 22144833 (+) False AMCG00005365
TU184992 other upstream 275961 21957440 ~ 21984144 (+) True G147029
TU184996 other upstream 290413 21968302 ~ 21969692 (+) False AMCG00005351
TU184986 other upstream 307223 21952569 ~ 21952882 (+) True G147025

Expression Profile