RNA id: AMCG00005381


Basic Information

Item Value
RNA id AMCG00005381
length 441
RNA type mRNA
GC content 0.67
exon number 4
gene id AMCG00005381
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 22175486 ~ 22178376 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggagagagagccAGTGAGTGTGATTGACTGGGTCCCTGTGGGTCCCTGTGGGTCCCTGTGGCTGCTCTGCCATGGCCCCACAGAGGAGGCGCCTGGGAAGGGTCCTGGGGGCCGGCCTGACACGGGGGCAAGAGCAGCAGTGTTTGAAGTGAGCGCAGAGGAGACGGGGGCGGGGCAGGAGCAGGGGCCCGTGGGGGAGGCGGCGGTGCTGGTGTCTGGGGTGTCCAGCCCCGCCGGTGCCCACGGCCCCGAGCCCAGGCCAGGGCCACCGTCTCCCCCCGGCAGCAGCGCCTCCGCCCGGCCGCCGGCTCAATCCCTCGCTTCAAAgccatttctctctcttcccaagAAATcGCTGCAGTGCCGGAATGCCAAAGATCCCTGCGTCAACAACGCCACCTGCGTCAGCTACGACAAAGTCTCCGGATACTGCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU185037 lncRNA upstream 88142 22081644 ~ 22087344 (+) True G147066
TU184988 lncRNA upstream 218441 21956601 ~ 21957045 (+) True G147027
TU184985 lncRNA upstream 224899 21950328 ~ 21950587 (+) True G147024
TU184983 lncRNA upstream 226868 21948086 ~ 21948618 (+) True G147022
TU184849 lncRNA upstream 430035 21744879 ~ 21745451 (+) True G146928
AMCG00005365 mRNA upstream 29876 22132565 ~ 22145610 (+) True AMCG00005365
AMCG00005370 mRNA upstream 43004 22130285 ~ 22132482 (+) True AMCG00005370
AMCG00005366 mRNA upstream 45237 22123782 ~ 22130249 (+) True AMCG00005366
AMCG00005364 mRNA upstream 52515 22116489 ~ 22122971 (+) True AMCG00005364
AMCG00005357 mRNA upstream 114019 22060209 ~ 22061467 (+) True AMCG00005357
AMCG00005378 mRNA downstream 3288 22181664 ~ 22198741 (+) True AMCG00005378
AMCG00005376 mRNA downstream 21809 22200185 ~ 22211145 (+) True AMCG00005376
AMCG00005377 mRNA downstream 46196 22224572 ~ 22229979 (+) True AMCG00005377
AMCG00005379 mRNA downstream 65928 22244304 ~ 22245551 (+) True AMCG00005379
AMCG00005380 mRNA downstream 81729 22260105 ~ 22261178 (+) True AMCG00005380
TU185050 other upstream 30653 22139187 ~ 22144833 (+) False AMCG00005365
TU185051 other upstream 30653 22139187 ~ 22144833 (+) False AMCG00005365
TU184992 other upstream 191342 21957440 ~ 21984144 (+) True G147029
TU184996 other upstream 205794 21968302 ~ 21969692 (+) False AMCG00005351
TU184986 other upstream 222604 21952569 ~ 21952882 (+) True G147025

Expression Profile