RNA id: TU192255



Basic Information


Item Value
RNA id TU192255
length 968
RNA type TUCP
GC content 0.48
exon number 4
gene id AMCG00005498
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3266374 ~ 3270844 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATTCGGCGCGTTTTCTTTAAAGCAGGGCAGGACTCCGGCATTGAATACTTTTCATTCTCTCACCTGTTGGACAGTACTGCTAGAGAGCCGCTGCTAAATCACATGCCAGCGGAAGTGCGTTTTCTGTGCGGAAGTGCGTTGTTTGTGTTGATGACGTCACGCCGATGACCTCAGCAGGGACGCAGCGTCATGCCGCCCCCGCTGCCCGCCGCCGAGCTGGTCCGCACGCCGCTGCGGCTCTACCGCTACCTGCTCCGCTGCTGCAGACAGCTGCCCTCCGCCGCCGCGCAGCAGCATTACCGGCACGCCGTGAGACAGGGCTTTAACTCGCACGCTGATGAAGACGACCCAGAGAGGGTCCAGCAGATCATCAGCCGAGCCATAGCGGATGCCGACTGGGTTATCGACAAATACAAGAAAAAGTAGCCAACCGAAGAGGCAGCAAGGGCAATATGAGGGACACCATGTCTAGCTTTGAGCTTTGTCCCAAGTGCCGTGGGCATGAGAACTGCTCTTCTGGAAGAAAGGGCTGGAAACGAGGAAGAGAGTTTTGACTCATTTTCTCAGTTCGGTGCATTTTGGCTGCATCAGAACCTTAGTTTTCTCAGTGagtaattcaattaaaaggTTGCGTGTTAGATTTGGTCAGTATGTGTAAATAGCACaactaatctttttttttttcccctctggcTGTTTCATGAGCCAGAATCATGTTTTTGTAAcgatgaaatgtgcatttccttttaGGAACTTTGGaccattgtgtatttatttaacttatttccTTGTTCCAGGAATGAATGGGTCAATAATTACAACCTGTTATTTGTCCATCTTTATTGCTGCTGTGTGCAGTAAGATCCCTGGGAGCGTGGGTGCAGCAATAATGCATGACAATCAAGCACAGGCAGGAATGAAAGAATAAtgcaatctaaaaataaaacaatgaaaaagcagAATTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192236 lncRNA upstream 6313 3260210 ~ 3260429 (+) True G152657
TU192235 lncRNA upstream 66555 3199332 ~ 3200187 (+) True G152656
TU192233 lncRNA upstream 79754 3184755 ~ 3186988 (+) True G152655
TU192232 lncRNA upstream 81410 3183821 ~ 3185332 (+) False G152655
TU192366 lncRNA downstream 453074 3723913 ~ 3761827 (+) True G152764
TU192522 lncRNA downstream 988027 4258866 ~ 4260635 (+) True G152866
TU192568 lncRNA downstream 1021191 4292030 ~ 4292882 (+) True G152906
TU192606 lncRNA downstream 1261482 4532321 ~ 4534824 (+) True G152943
TU192772 lncRNA downstream 1919688 5190527 ~ 5190796 (+) True G153080
AMCG00005508 mRNA upstream 10636 3229689 ~ 3256106 (+) True AMCG00005508
AMCG00005507 mRNA upstream 63982 3201501 ~ 3202760 (+) True AMCG00005507
AMCG00005506 mRNA upstream 87062 3173579 ~ 3179680 (+) True AMCG00005506
AMCG00005509 mRNA upstream 94807 3151681 ~ 3171935 (+) True AMCG00005509
AMCG00005490 mRNA upstream 370073 2893305 ~ 2896669 (+) True AMCG00005490
AMCG00005499 mRNA downstream 14031 3284870 ~ 3295314 (+) True AMCG00005499
AMCG00005500 mRNA downstream 34050 3304889 ~ 3306844 (+) True AMCG00005500
AMCG00005522 mRNA downstream 362894 3633733 ~ 3637811 (+) True AMCG00005522
AMCG00005526 mRNA downstream 372050 3642889 ~ 3644121 (+) True AMCG00005526
AMCG00005523 mRNA downstream 378008 3648847 ~ 3652715 (+) True AMCG00005523
TU192155 other upstream 417134 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 756066 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 756066 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 1462839 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 1517808 1745960 ~ 1748934 (+) True G152267
TU192563 other downstream 1012221 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1289374 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 1943984 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 3216879 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 3989838 7260677 ~ 7265971 (+) True G153675

Expression Profile