RNA id: AMCG00005506


Basic Information

Item Value
RNA id AMCG00005506
length 2323
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00005506
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3173579 ~ 3179680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGACgcaatggaaaaataaacgGTAGCACTACAGAGAAGGAGCAGATTCTTTCTGTGAACGTGTCGATCAACCTGCCTTGTACCCGTGTTGGAAATGGCGGCCGACAACTAGCAGACGCCAACTTCAAACCCAAACCGACAGGAAGGGCGGTTCCCACTCTCCCTAAAGTGGGGAGTAAATCCGGGTCTAATCATAAGAACAGTATGGACAGCAAGAATGACAAACCCTTGGATTTTAAATCTCGGGAGGGCAAATCGATGGATAAGAAGGAGTCTGTGATGATTCTGAACGGAGTCGTGGCACTTAACGCTGGTTACATTACGAACGGTTTCCCAATCAAGCCGGTGCCTGACAACGATGGCAGCGGCTCAGAGAGCGGATACACCACACCCAAGAAGAGGAAAGCCAGGCGCAGCAGCGTCCGCAGCCTGGAGAATGTGACTGTTCTGCCCGAGAAAGCCATGCAGCAGGGAGCACCTGGTCCTAAGCCGGAGTCAGAACTTTTCAACGTGGAACTTGCCGAAAAAGTGGCGAGCATGCGGCTGGATGGACCCAAAGCCGTTGCCAAAGCCGACCCCCTGTCTGGAGCTGCCCGGGCAAAGGCCGTGCCGCTTGTGGCTGCCGGAGGGGCGGGGGCAGTGCCCGTGGGGCTGACGGGCGAGTTGCAGAGGAAAAACTCGGACAGTAAGGCTGCGGGCACGGCTGGTAAAAAATTCGACGAGAGGCCTGGTAAAGCAAAGCTTGCCACGGCCTCCACGAGTTCAAAAGAGGACtcgtggactttattcaaaccTCCCCCTGTGTTTCCCGTGGACAATAGTAGCGCCAAGATCGTCCCCAAGATAAGTTATGCAAGCAAAGTAAAGGAGAACCTTAACAAagcagcccaggccacaggggAGCCCCAGTACACCCAGGTGCCTGCAAGACTGTCACAAGTTCCCATGTCTGCTATGAAAACGGTCTCTGGGGCTAGTTTTACCAACGGCCCGGTCTCGGGAGACGCAAGCGCATGCTCCCTGGCCGGGGCCCTCTTCGTCTCTGCTGCTAGTACTGTACCGCCAGGCTCCTCACTCACGGGGGGTGAGAATGTAGCTTCATCTCCTGACAACAGCAGCGGCAACGCCCCTACCCCTTCAGCCGTCACTGGTGAACAGAGGAAATCCAACCTTTTCGTTTACCCTTTGACCCCTTCCAATATGCAACCCGGGCTCCCCAGTGCCCACGCCGTGGCTCTCTCTGCTGTTCAGACACATCAGAAAGCCCTGGGGGAGATCTTCCAGAACCAGTGGGGGCTGTCCTTCATCAACGAGCCCAGCGTGGGGCCCGAGGGGGCACCGGGGCGGTCGGCGGTGGAGGGCAAGATGGCCGAGGTGACGTTCCAGGGGGAGTGTACCGCCGCCTTGACCTCCGAGGCTCTGCTCTTGGGACGGGAGCGGCCGTTGTTCCCCAAGGCCTATGAACTGGACAAACGGACTAGCCCCCAATCTCTTGGCAGTGTTTTAAAAGTGTGCTCCCCTGCAACGTTTGTCAGTGAGGGGGGCACGCCGCTTCAGCCCCACGAACTGGACCTCCAGAAAGGCGAAGCTGGGACCCTAGGTGCAATAGTGTTTGCTTCTTCTAAGGACCTTGGTGCTGAGTCACCGCAGGCCTCCCCAACTAACCCTGTTATGGCCGAGGCCAAAGAGCACGGCCAGCCGAAGGGCTTTGACAGAAGGTGTAGCTTGGGGTCGTTTGATCTTAAAGCTGCTGTTATTTATCACACTAAAGaTCCAAAAAGAGTAGTCCATTACAATAAAACCAAGGATGGACCAGGACAATGAGGTTGCGATTTGAGAACACTAGCCTGCTTTTTACCTGAACGCAGCAGCTACAGCTGCCTGAAGGTTATATCTGctcctttaaaaaagaaatacatacaatgcGTAAATGAATCTTTCACTTTCATAGTGGAACCAAGAAGGAGTATCCTGCAACAGAGACTACAATGTGGAATAGAAAAAGCGAGGAACTGGAGAGGACGAAAGGGAGAAATGTCAAAATGGAATGGTAAAGGGGATAAAAGGAAGGAGAAAAAGAGGCTTTTCTGAGGAAGTAAAGAAGAGTCTGTGGTTTCACGGAGCTGCCTCAGCAGACCTACAGCCCAGACCTGCGCACATTCAGAGGATAGCCTCGACTTCTGGTACAGACTAGAGTATCCTGGCTGAAAGACTTTGTGGAAACATGCTGTGGGCTCGCTGACccgcaacaaacaaacaagcaaacaaaaacacttggGCCTAACGTTTCCTGCTGTGACGCAGGCTTGTGGAACCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192219 lncRNA upstream 82924 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA upstream 82924 3071950 ~ 3090655 (+) False G152644
TU191902 lncRNA upstream 850234 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 1226779 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 1657627 1509502 ~ 1515952 (+) False AMCG00005434
TU192232 lncRNA downstream 4141 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 5075 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 5075 3184755 ~ 3185332 (+) False G152655
TU192235 lncRNA downstream 19652 3199332 ~ 3200187 (+) True G152656
TU192236 lncRNA downstream 80530 3260210 ~ 3260429 (+) True G152657
AMCG00005509 mRNA upstream 1644 3151681 ~ 3171935 (+) True AMCG00005509
AMCG00005490 mRNA upstream 276910 2893305 ~ 2896669 (+) True AMCG00005490
AMCG00005492 mRNA upstream 301706 2866971 ~ 2871873 (+) True AMCG00005492
AMCG00005494 mRNA upstream 316467 2850092 ~ 2857112 (+) True AMCG00005494
AMCG00005493 mRNA upstream 328878 2834497 ~ 2844701 (+) True AMCG00005493
AMCG00005507 mRNA downstream 21821 3201501 ~ 3202760 (+) True AMCG00005507
AMCG00005508 mRNA downstream 50009 3229689 ~ 3256106 (+) True AMCG00005508
AMCG00005498 mRNA downstream 86694 3266374 ~ 3270844 (+) True AMCG00005498
AMCG00005499 mRNA downstream 105190 3284870 ~ 3295314 (+) True AMCG00005499
AMCG00005500 mRNA downstream 125209 3304889 ~ 3306844 (+) True AMCG00005500
TU192155 other upstream 323971 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 662903 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 662903 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 1369676 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 1424645 1745960 ~ 1748934 (+) True G152267
TU192254 other downstream 87062 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 87062 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1103380 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1380533 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 2035143 5214823 ~ 5221915 (+) False AMCG00005583

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00017177 False 5724 mRNA 0.43 4 NC_007126.7 30126971 ~ 30137780 (+)