RNA id: AMCG00005546



Basic Information


Item Value
RNA id AMCG00005546
length 816
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00005546
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4560213 ~ 4563020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGGCCTGGCGCATGACCCTGAAGACCCCGGAGTACCCCGCGGGGCGTGACATCATCGTGATCAGCAATGACATCACCCACAAGATCGGCTCGTTCGGGCCGCAGGAGGACGTCCTGTTCCAGCAGGCGTCGGAGCTCTCCCGGGACGAGGGCATCCCACGCATCTACATCGCGGCCAACAGCGGGGCGCGCATCGGCCTGGCGGAGGAGATCCGGCACATGTTCCACGTGGCCTGGCAGGACCCCGCCGACCCCTACAAGGCGAGTTGCCTCCTGCTGAGAAAACATTCGGGATTCGGGTTATCTGAGCATGAAATTAAGGCGAATTCGCCGGCAGAAGGCTCCAATCAGCAGTTTGACTCGCAGCCCCCAGCGCTCAAGTTTTTACATTACTGGGGGGCGGCAGTGAAAACTAAACCTGGACCAGCGCAGATAGCAGAAACAGGTGAAAGATCAAAAGAAATAAACCGTGAGTGGGGGTTCAAGTACCTGTACCTCACGCCCCAGGATTATAAGAAGGTGTCGGCTCTGAACTCTGTGCACTGCGAGCACGTGGAGGATGAGGGCGAATCCAGGTACAAAATCACAGACATTATCGGGAAGGAGGAAGGCCTGGGCGTGGAGAACCTGCGCGGCTCTGGGATGATCGCCGGGGAGTCTTCGCTGGCCTACGAGAAGGTCATCACCATGAACCTGGTGACTTGTCGTGCAATCGGGATCGGGGCGTACCTGGTGAGACTTGGCCAGAGGACCATCCAGGTGGAGAATTCTCACATCATCCTGACCGGAGCTGGGGCCCTCAACAAGAActga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192606 lncRNA upstream 25397 4532321 ~ 4534824 (+) True G152943
TU192568 lncRNA upstream 267339 4292030 ~ 4292882 (+) True G152906
TU192522 lncRNA upstream 299586 4258866 ~ 4260635 (+) True G152866
TU192366 lncRNA upstream 798394 3723913 ~ 3761827 (+) True G152764
TU192236 lncRNA upstream 1299792 3260210 ~ 3260429 (+) True G152657
TU192772 lncRNA downstream 627507 5190527 ~ 5190796 (+) True G153080
TU192775 lncRNA downstream 632768 5195788 ~ 5201535 (+) True G153082
TU192811 lncRNA downstream 744925 5307945 ~ 5309091 (+) True G153113
TU192816 lncRNA downstream 758040 5321060 ~ 5323923 (+) True G153118
TU192858 lncRNA downstream 881359 5444379 ~ 5445257 (+) True G153154
AMCG00005545 mRNA upstream 40116 4495608 ~ 4520105 (+) True AMCG00005545
AMCG00005544 mRNA upstream 69402 4479446 ~ 4490819 (+) True AMCG00005544
AMCG00005537 mRNA upstream 250073 4305625 ~ 4310148 (+) True AMCG00005537
AMCG00005538 mRNA upstream 255065 4282517 ~ 4305156 (+) True AMCG00005538
AMCG00005534 mRNA upstream 279776 4264415 ~ 4280445 (+) True AMCG00005534
AMCG00005553 mRNA downstream 41856 4604876 ~ 4615951 (+) True AMCG00005553
AMCG00005554 mRNA downstream 63093 4626113 ~ 4635255 (+) True AMCG00005554
AMCG00005577 mRNA downstream 421210 4984230 ~ 5000598 (+) True AMCG00005577
AMCG00005580 mRNA downstream 459251 5022271 ~ 5067746 (+) True AMCG00005580
AMCG00005578 mRNA downstream 509106 5072126 ~ 5079503 (+) True AMCG00005578
TU192563 other upstream 275258 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 1289382 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 1289382 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 1710613 2845217 ~ 2849608 (+) True G152588
TU192048 other upstream 2049545 2503993 ~ 2510676 (+) False AMCG00005481
TU192781 other downstream 651803 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 1924698 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 2697657 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 3652870 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 3941175 8504195 ~ 8507075 (+) False AMCG00005720

Expression Profile