RNA id: AMCG00005571



Basic Information


Item Value
RNA id AMCG00005571
length 669
RNA type mRNA
GC content 0.60
exon number 4
gene id AMCG00005571
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5121930 ~ 5126973 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


acAGTGGAGGTCTGTCTGCTCCACATGTTGAAGCGGCGAGCGGCTGGCTTCCTCCGCAGTGACAAGATCGCCGCGCTCTTCACCAAGATCGGCAAGGTGTACGACACAGCTGGAGAGGTGTGCAAGAAGGTGCAGGAGCAGCTGCAACAGCAGACCGAGGCCACCAGGAGGGCTCAGTCCAGTGGCCAGGAGTCTCTGAAGAGGCAGAACTCGACAGCAGGCCGCCCCCCGCAGCCCCTCACCCCCCAGGCCATTAAACACATCTGGGTTCGGACTGCGCTCTTTGAGAAGGTGCTGGACAAGATCGTGCAGTACATCGTGGACAACTCCAGtaAGTACTACGAGAAGGAGGCTCTGATGCACGATGCCGTCTTCGGGCCCATTCTGGCTGCTTTACTCGTGGGGCCGTGCGCTCTGGAGTACACCAAGCTGAAGACCTCTGATCATTTCTGGACCGACCCCTCGGCCAATGAGCTCGTGCAGCGCCACCGAATCCATGGCGCCACCAGCCGCCAGGACTCCTCGCCCTCCCGCCGACCTGCCCTGGGGGTGAGGAGGACCAACAGCTTTGGGGAGGGAGGGGCTGGGATAAGGGTGAGAGTTGAGGAGGGCAGTACACAGTATCACCTAATTTACTTCAGTTGGCGTCACAGCAGTTTGGTGCTATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192606 lncRNA upstream 587106 4532321 ~ 4534824 (+) True G152943
TU192568 lncRNA upstream 829048 4292030 ~ 4292882 (+) True G152906
TU192522 lncRNA upstream 861295 4258866 ~ 4260635 (+) True G152866
TU192366 lncRNA upstream 1360103 3723913 ~ 3761827 (+) True G152764
TU192236 lncRNA upstream 1861501 3260210 ~ 3260429 (+) True G152657
TU192772 lncRNA downstream 63554 5190527 ~ 5190796 (+) True G153080
TU192775 lncRNA downstream 68815 5195788 ~ 5201535 (+) True G153082
TU192811 lncRNA downstream 180972 5307945 ~ 5309091 (+) True G153113
TU192816 lncRNA downstream 194087 5321060 ~ 5323923 (+) True G153118
TU192858 lncRNA downstream 317406 5444379 ~ 5445257 (+) True G153154
AMCG00005570 mRNA upstream 31072 5087506 ~ 5090858 (+) True AMCG00005570
AMCG00005579 mRNA upstream 39910 5080135 ~ 5082020 (+) True AMCG00005579
AMCG00005578 mRNA upstream 42427 5072126 ~ 5079503 (+) True AMCG00005578
AMCG00005580 mRNA upstream 54184 5022271 ~ 5067746 (+) True AMCG00005580
AMCG00005577 mRNA upstream 121332 4984230 ~ 5000598 (+) True AMCG00005577
AMCG00005569 mRNA downstream 114 5127087 ~ 5142596 (+) True AMCG00005569
AMCG00005585 mRNA downstream 81827 5208800 ~ 5211337 (+) True AMCG00005585
AMCG00005583 mRNA downstream 87840 5214813 ~ 5241776 (+) True AMCG00005583
AMCG00005584 mRNA downstream 143424 5270397 ~ 5278525 (+) True AMCG00005584
AMCG00005612 mRNA downstream 183297 5310270 ~ 5311298 (+) True AMCG00005612
TU192612 other upstream 560446 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 836967 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 1851091 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 1851091 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 2272322 2845217 ~ 2849608 (+) True G152588
TU192781 other downstream 87850 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 1360745 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 2133704 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 3088917 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 3377222 8504195 ~ 8507075 (+) False AMCG00005720

Expression Profile