RNA id: AMCG00005579


Basic Information

Item Value
RNA id AMCG00005579
length 396
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00005579
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5080135 ~ 5082020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCTCTCCGCTTGCTCGAgtggctgtttttcttttatttcgcCTCTCATATCCCCATCACTCTTTTCATTGACTTGCAGGCTCTGCTGCCGGCCGAGATCTACCCCCAGACTGTGAGAGGCCGCCGCTGGATCCGCATCCCTGCCATCATCTACTCCGTCCACGTGGCGACCACCCTGATCCCCATCCTcacccacatcctgttccaccGCTTCCCCGGGACGCCCCACCCCGGCCCCCAGACCCCCTCCGAGCGGCTGGCGCTGCTGGGCATCTACTCCCCGTACCTCCTCGtgcccctcctcctcctgctcacCATGCTGCTCAGCTCCAGCTACAGAGGCGAAGCCCGGCCTGGGAAAGCGACGGCGAGTCAGAAGAAGAGCAGATAA

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko04146 Peroxisome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192606 lncRNA upstream 545311 4532321 ~ 4534824 (+) True G152943
TU192568 lncRNA upstream 787253 4292030 ~ 4292882 (+) True G152906
TU192522 lncRNA upstream 819500 4258866 ~ 4260635 (+) True G152866
TU192366 lncRNA upstream 1318308 3723913 ~ 3761827 (+) True G152764
TU192236 lncRNA upstream 1819706 3260210 ~ 3260429 (+) True G152657
TU192772 lncRNA downstream 108507 5190527 ~ 5190796 (+) True G153080
TU192775 lncRNA downstream 113768 5195788 ~ 5201535 (+) True G153082
TU192811 lncRNA downstream 225925 5307945 ~ 5309091 (+) True G153113
TU192816 lncRNA downstream 239040 5321060 ~ 5323923 (+) True G153118
TU192858 lncRNA downstream 362359 5444379 ~ 5445257 (+) True G153154
AMCG00005578 mRNA upstream 632 5072126 ~ 5079503 (+) True AMCG00005578
AMCG00005580 mRNA upstream 12389 5022271 ~ 5067746 (+) True AMCG00005580
AMCG00005577 mRNA upstream 79537 4984230 ~ 5000598 (+) True AMCG00005577
AMCG00005554 mRNA upstream 444880 4626113 ~ 4635255 (+) True AMCG00005554
AMCG00005553 mRNA upstream 464184 4604876 ~ 4615951 (+) True AMCG00005553
AMCG00005570 mRNA downstream 5486 5087506 ~ 5090858 (+) True AMCG00005570
AMCG00005571 mRNA downstream 39910 5121930 ~ 5126973 (+) True AMCG00005571
AMCG00005569 mRNA downstream 45067 5127087 ~ 5142596 (+) True AMCG00005569
AMCG00005585 mRNA downstream 126780 5208800 ~ 5211337 (+) True AMCG00005585
AMCG00005583 mRNA downstream 132793 5214813 ~ 5241776 (+) True AMCG00005583
TU192612 other upstream 518651 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 795172 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 1809296 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 1809296 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 2230527 2845217 ~ 2849608 (+) True G152588
TU192781 other downstream 132803 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 1405698 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 2178657 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 3133870 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 3422175 8504195 ~ 8507075 (+) False AMCG00005720

Expression Profile