RNA id: TU192781



Basic Information


Item Value
RNA id TU192781
length 591
RNA type TUCP
GC content 0.48
exon number 4
gene id AMCG00005583
representative False

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5214813 ~ 5241776 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGCAAATCAGTACAGTGAGTGAATCGGGAGAGCCTCTGTGGATCTGGGACCAGACAACAatcacaataacacacacacacacgcatctGAAACCTGCAAATGGACAACTGCATCTCCCATCTCCTTCACAGTAACTCAGCCCTGACTTCGTCCTAGAAACAACAGAcgtacaaaaataacaatattaataaaagaaagTGTTGCTGCTGATCCCAGTCTGTTTGCAGCTGCGTGCACCTGGCGGATTTGTTAGCAATGGCAAAACGCAGCACTTTATTTATCCGAATCGTGGAGGGGAAGAATTTACCCGTTAAGGATatCACTGGGAGCAGCGATCCCTACTGCATCGTCCGGATCGATAATGAGGCCATTATAAGGACAGCAACCATTTGGAAGACCCTGTCACCATTTTGGGGGGAGGAGTATAATGTCCACCTCCCAGAGTCCTTTCACACAGTGTCCTTCCATGTGCTGGACGAGGATTCTCTCAGCCGAGATGACGTCATCGGAAAGGTGTCCATCACAAAAGAAGCCCTTGCTGGCAAACCACAAGGTGAGAAAATCCCAGCTGAGGATGCACGGATCATTAGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192775 lncRNA upstream 13288 5195788 ~ 5201535 (+) True G153082
TU192772 lncRNA upstream 24027 5190527 ~ 5190796 (+) True G153080
TU192606 lncRNA upstream 679999 4532321 ~ 4534824 (+) True G152943
TU192568 lncRNA upstream 921941 4292030 ~ 4292882 (+) True G152906
TU192522 lncRNA upstream 954188 4258866 ~ 4260635 (+) True G152866
TU192811 lncRNA downstream 86030 5307945 ~ 5309091 (+) True G153113
TU192816 lncRNA downstream 99145 5321060 ~ 5323923 (+) True G153118
TU192858 lncRNA downstream 222464 5444379 ~ 5445257 (+) True G153154
TU193001 lncRNA downstream 578733 5800648 ~ 5800892 (+) True G153271
TU193006 lncRNA downstream 694920 5916835 ~ 5955451 (+) True G153274
AMCG00005585 mRNA upstream 3486 5208800 ~ 5211337 (+) True AMCG00005585
AMCG00005569 mRNA upstream 72227 5127087 ~ 5142596 (+) True AMCG00005569
AMCG00005571 mRNA upstream 87850 5121930 ~ 5126973 (+) True AMCG00005571
AMCG00005570 mRNA upstream 123965 5087506 ~ 5090858 (+) True AMCG00005570
AMCG00005579 mRNA upstream 132803 5080135 ~ 5082020 (+) True AMCG00005579
AMCG00005584 mRNA downstream 48482 5270397 ~ 5278525 (+) True AMCG00005584
AMCG00005612 mRNA downstream 88355 5310270 ~ 5311298 (+) True AMCG00005612
AMCG00005615 mRNA downstream 103772 5325687 ~ 5339731 (+) True AMCG00005615
AMCG00005614 mRNA downstream 126916 5348831 ~ 5355701 (+) True AMCG00005614
AMCG00005613 mRNA downstream 134288 5356203 ~ 5360923 (+) True AMCG00005613
TU192612 other upstream 653339 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 929860 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 1943984 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 1943984 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 2365215 2845217 ~ 2849608 (+) True G152588
TU193227 other downstream 1265803 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 2038762 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2993975 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 3282280 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 4213985 9435900 ~ 9438269 (+) True G154251

Expression Profile