RNA id: AMCG00005596



Basic Information


Item Value
RNA id AMCG00005596
length 366
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00005596
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5776514 ~ 5784334 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTCTGTCTCAGCGCTTTCTAGTGAGGTACGGGTCAGGCGTGTGCAACATGAACAGGGGACCGGCTATTCCTGTTGTGTATGACTTTGGGAACAAGCAGTCTACCACACAGTTGTATGGCCCAAGTGTTCAAGgaggaggatatTTCCCGCAAGGTGATGGAAGACAGTTTGGCGATTTCTCAGGATTTGACTGGGATGGCTCTGTAACGCATTACTgtgtgggaggaggaggatatTTCCCGCAAGGTGAAGGAAGACAGTGTGGCGATTTCTCAGGATTTGACTGGGATGGCTATGGAACACATGTAGGAGCAAGTGCATCCAGAGAAATGACCCAGTCTGCTATGCTGCTGTTTTACCGCTGA

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU192858 lncRNA upstream 331257 5444379 ~ 5445257 (+) True G153154
TU192816 lncRNA upstream 452591 5321060 ~ 5323923 (+) True G153118
TU192811 lncRNA upstream 467423 5307945 ~ 5309091 (+) True G153113
TU192775 lncRNA upstream 574979 5195788 ~ 5201535 (+) True G153082
TU192772 lncRNA upstream 585718 5190527 ~ 5190796 (+) True G153080
TU193001 lncRNA downstream 16314 5800648 ~ 5800892 (+) True G153271
TU193006 lncRNA downstream 132501 5916835 ~ 5955451 (+) True G153274
TU193057 lncRNA downstream 263796 6048130 ~ 6048438 (+) True G153312
TU193099 lncRNA downstream 447825 6232159 ~ 6234047 (+) True G153348
TU193133 lncRNA downstream 498654 6282988 ~ 6331371 (+) True G153381
AMCG00005604 mRNA upstream 4455 5752537 ~ 5772059 (+) True AMCG00005604
AMCG00005602 mRNA upstream 28678 5745457 ~ 5747836 (+) True AMCG00005602
AMCG00005603 mRNA upstream 31693 5737790 ~ 5744821 (+) True AMCG00005603
AMCG00005589 mRNA upstream 109646 5648461 ~ 5666868 (+) True AMCG00005589
AMCG00005590 mRNA upstream 136578 5626706 ~ 5639936 (+) True AMCG00005590
AMCG00005595 mRNA downstream 760 5785094 ~ 5802056 (+) True AMCG00005595
AMCG00005594 mRNA downstream 61261 5845595 ~ 5846484 (+) True AMCG00005594
AMCG00005607 mRNA downstream 84006 5868340 ~ 5882291 (+) True AMCG00005607
AMCG00005609 mRNA downstream 107419 5891753 ~ 5896304 (+) True AMCG00005609
AMCG00005608 mRNA downstream 117157 5901491 ~ 5904639 (+) True AMCG00005608
TU192781 other upstream 554599 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1215030 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 1491551 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 2505675 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 703384 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 1476343 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2431556 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2719861 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3651566 9435900 ~ 9438269 (+) True G154251

Expression Profile