RNA id: TU193313


Basic Information

Item Value
RNA id TU193313
length 1323
lncRNA type read_through
GC content 0.38
exon number 2
gene id AMCG00005663
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6608643 ~ 6662480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttttttttttttttttttttttttttaaagaatccCTAAAGTAATCTTTGTACCTGAATGGATATTTTGGAGCAGGTCTGACTGACGACGACTAAATGGAAGTCCGGAACTGAAGCTCTGGGTGTCTTTTGAAAGTGTCACTCCTCTGACTTTCCGATTGATTTGAATAATGACGGTCTTGTGTTAAATACGTTACGAGACGACGTTTCGAACTCTTTCCCGGTGAGAGCGAGGGTCTGTCGGACAGGTGGCTCTGACTTGTCCACGTGGACTCCTGTTCTTTTAAGTGAAACGTCCTTTTGGTGTTTTTAACCGTCTTTGATATTGTACAGACCGCAGTCTCTGTTCATTTTCTGTGTAGTCAGGgtgggtggggggcgggggggggctgCACCATTGTTGCACTTTTGCATTGTGACTTTTTAAGACGTACACAGAATTGTACTACCTGTTTGATTTGGGCACATTCGGAAAATGTTAGCCTTGCATGGCATTTTCTAAAAGTGAATTATGAATAACATTTCATACGTGCCAGTCCTGGGCGATTCTCCGCCTCCAGTTGACTTTCTTTTGCcacaaattcattatttttgtatcgtAACTAATGAccttcagtttaattttgtatatggTACAGTCATGTGTAGTGGGGTAGCTGTTAATTGCACTTTCATGACATATAAacgtttaatttttttcaaactAAACTGAAGTGCAGCTCTCTCGTGTCTTTCAAAGAGGAATTTATTGATTTgctatggattttttttaaaataataatgataatattgatAAGTCACTAAGATTTGTGAAGTCAAACTTTATTTCCCTTTGCTTATGTGAAAACAAGTCTCTGTTCTTCACACGTTTGTTCCTGATTTTAAAATCCCAGAGCTGTCGTTCCAATTTCCATTCCCCCCCAACCCGCCCCCCATATGAttttttcttgtccttttttttttcgtttagtTATTTGACGAGGTGTCAAGTGTTTACAATGGCAACGACGAtggcaaaaacacacaagtttACAAAAAGTGAATCTTAACCATAAAGGATCGATGCAGTTTTCCATTCTTCTGACCTTTTTTAAGTGGTTATAATTTCTGTTAAATCTGAGACTTACAAGCCCATGCATCACATCATGTTAAAACGCAGTTTGTATCGCACAATGTCTTTTTAGTAGTCAATGACGAGAGTTCAGACCAATCAATAAAGTGGATCAGTTCTCCACCTCTCTGAAGAatgtttctctgtctgttttctttgtttagcCAGTGGTTTTCCCTGTAATAAACCTCTTCTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193268 lncRNA upstream 45165 6560899 ~ 6563478 (+) True G153485
TU193199 lncRNA upstream 171904 6435464 ~ 6436739 (+) False AMCG00005647
TU193146 lncRNA upstream 214915 6333252 ~ 6393728 (+) True G153390
TU193133 lncRNA upstream 277272 6282988 ~ 6331371 (+) True G153381
TU193099 lncRNA upstream 374596 6232159 ~ 6234047 (+) True G153348
TU193461 lncRNA downstream 439725 7102205 ~ 7157875 (+) True G153626
TU193551 lncRNA downstream 634654 7297134 ~ 7297381 (+) True G153687
TU193553 lncRNA downstream 635674 7298154 ~ 7298512 (+) True G153689
TU193564 lncRNA downstream 658135 7320615 ~ 7321251 (+) False AMCG00005694
TU193569 lncRNA downstream 697904 7360384 ~ 7361317 (+) True G153702
AMCG00005669 mRNA upstream 38544 6568087 ~ 6570099 (+) True AMCG00005669
AMCG00005668 mRNA upstream 47976 6551704 ~ 6560667 (+) True AMCG00005668
AMCG00005670 mRNA upstream 81099 6520852 ~ 6527544 (+) True AMCG00005670
AMCG00005666 mRNA upstream 100026 6508285 ~ 6508617 (+) True AMCG00005666
AMCG00005667 mRNA upstream 119861 6487911 ~ 6488782 (+) False AMCG00005667
AMCG00005662 mRNA downstream 1699 6664179 ~ 6669390 (+) True AMCG00005662
AMCG00005643 mRNA downstream 121682 6784162 ~ 6785859 (+) True AMCG00005643
AMCG00005630 mRNA downstream 270774 6933254 ~ 6936834 (+) True AMCG00005630
AMCG00005681 mRNA downstream 484519 7146999 ~ 7151960 (+) True AMCG00005681
AMCG00005682 mRNA downstream 508045 7170525 ~ 7174305 (+) True AMCG00005682
TU193227 other upstream 120023 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 1386728 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 2047159 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 2323680 4283060 ~ 4284963 (+) False AMCG00005538
TU192255 other upstream 3337804 3266742 ~ 3270839 (+) False AMCG00005498
TU193523 other downstream 598197 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 1553410 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 1841715 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 2773420 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 2925322 9587802 ~ 9589798 (+) True G154283

Expression Profile