RNA id: AMCG00005751


Basic Information

Item Value
RNA id AMCG00005751
length 1113
RNA type mRNA
GC content 0.55
exon number 9
gene id AMCG00005751
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9115471 ~ 9128845 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGTGTCTGGACTATCTCCCCCTGATCCCTTTCCCCGGCCCTCTTGTTGCTCCGCAGGCCTGAGCGCTGAGAAGATTGCCTCTTTTACCAAGCGTCTGAAGGCGGAGCCGCGCTTCCTGCTGGCCCAGAATGTGTCCACCTGCAACGACCCCCTGGAGGTGTGTCTGCACAGGAAGACAGTGCAGGACACTGTCCACATCTTCCAACACACCATCCCCACCGAGGGCAAGCCGGTCACCAACCAGAAGAACTCAGGGAGGTGCTGGATTTTCTCTTGCCTCAATGTGGAACGCTGCTACTACTTCCTGCAAGTGTACATAGAGACGGCCCTGCGGAACGAGCCCGTGGACGGCCGGCTGGTCCAGTTCCTGCTCTCCAACCCCACCAACGACGGCGGCCAGTGGGACATGCTGGTCAACCTCATCGAAAAATATGGTGTTATCCCAAAGAAGTGCTTCCCAGAATCCCACAGCTCCGAGGCAtccaggagaatgaatgacatCCTGAATCACAAGCTCAGGGAGTACTGCCTTCGACTGAGGAACATGGTAGCCAGCAACGCGACTAAAGCCGAGCTCTCTGAGACTGTGGACACCATGATAGAGGAGGTGTTCCGAGTGGCCAGTGTGTGCCTTGGCAGTCCTCCGGAGACCTTCTGCTGGGAATATCGGGATAAGGACAAGAACTTCCACAGACTTGGACATCTCACCCCTCTGCAGTTCTACAAAGAGCATGTCAAACCCCTGTACAACATTGAGGACAAGATCTGCCTAGTCAATGACCCCCGGCCCCAGAACCCCTATGGAAAGCTGTACACAGTGGAGTTCCTGGGGAACATGGTTGGTGGACGGAGGACGCAGTACAACAACCAGTCCATCGACCTCCTCAAGAAAGCTGCTGCGGACTCCATCAAAGACGGAGAGGCTGTCTGGTTCGGCTGTGACGTGGGCAAGCACTTCCATGGCAAGCTGGGCATCAACGACatgaatgtCTTTAACCACGAGCTTGTGTTTGGCATCTCTGTGAAGAACCTATCCAAGGCAGAGCGTCTGATCTTTGGAGACTCACTGATGACCCACGCCATGATCCTGACCGCAGTCACTGACAAG

Function

GO: NA

KEGG:

id description
K01372 BLMH, pepC; bleomycin hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194153 lncRNA upstream 7101 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 7101 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 20801 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 43724 9021950 ~ 9071747 (+) True G154091
TU194041 lncRNA upstream 261618 8853578 ~ 8853853 (+) False AMCG00005787
TU194189 lncRNA downstream 63451 9192296 ~ 9194187 (+) True G154175
TU194291 lncRNA downstream 311648 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 776927 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 949462 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 1138428 10267273 ~ 10356244 (+) True AMCG00005929
AMCG00005749 mRNA upstream 22908 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005745 mRNA upstream 76409 9035288 ~ 9039062 (+) True AMCG00005745
AMCG00005746 mRNA upstream 98733 9010184 ~ 9016738 (+) True AMCG00005746
AMCG00005742 mRNA upstream 211387 8897277 ~ 8904084 (+) True AMCG00005742
AMCG00005788 mRNA upstream 231670 8876410 ~ 8883801 (+) True AMCG00005788
AMCG00005752 mRNA downstream 2192 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005753 mRNA downstream 30386 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005750 mRNA downstream 36188 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005774 mRNA downstream 111789 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005775 mRNA downstream 123509 9252354 ~ 9269236 (+) True AMCG00005775
TU193852 other upstream 608396 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 884881 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1849500 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2626851 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 3893556 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 307055 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 458957 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 752537 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 936315 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 951590 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018274 False 1653 mRNA 0.48 12 NC_007126.7 28634580 ~ 28677725 (-)
eurasian perch (Perca fluviatilis) TU4712 True 281 lncRNA 0.48 2 NC_053112.1 9751329 ~ 9755028 (-)
mexican tetra (Astyanax mexicanus) TU4712 False 1815 lncRNA 0.39 12 NC_035897.1 14414289 ~ 14435581 (+)