RNA id: AMCG00005774


Basic Information

Item Value
RNA id AMCG00005774
length 3591
RNA type mRNA
GC content 0.66
exon number 14
gene id AMCG00005774
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9240634 ~ 9251830 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATACCGAAGTAGAAAGCGGTGTGGGGGGGAAGGTCCCTGCAGAAAATCAGAATGTAAAACCATTGCTGGCGTCTTTGACCAAGGTCATCAGCGAGAGCTTTCTGACTGTGAAAGGGGCTGCCCTCTTCCTGCCCCGCGGGAATGGCTCCACCTCCCCGTCCCCCACTGCCCCCTCCCGCGTCAGCCAGCGCCGCAACAAGCATGCAGGTGACCTCCAGCAGCACCTGCAGACAATGTTCACCCTGCTGAGGCCTGAGGACAACATCAGACTGgcagtaCGGTTGGAGAGTGCCTATCCCCAGTGCACACGGTACATGGTGGTTGTGTCCACGAACGGCCGGCAGGACACTGAGGAGAGCATCGTACTGGGGATGGACTTCGCCCGGGACAGCAGCTCCTGCACCGTGGGGCTGGTCCTGCCCCTGTGGAGTGACACTCTCATCCACCTGGACGGAGACGGGGGCTTCAGCGTGTCAACAGTGAACCGCGTCCATGTGTTCAAGCCAGTGTCCGTGCAGGCCATGTGGTCGGCCCTGCAGTCCCTCCACAAGGCCTGTGAAGTGGCACGCTGCCACAACTACTACCCCGGCAGCCTGTTCCTCACCTGGGTCAGCTACTACCACAGCCGCATCACCTCGGACCAGGTCTGCATCAACGAGTGGAACGCCATGCAGGATGTGCAGTCGCACCGCGCCGACTCCCCCGTGCTCTTCACAGACGTCCCCACGGAGAGAGAGCGCACAGAGAGGCTGATCAAGACACGCCTGCGAGAGATCATGATGCAGAAGGACCTGGAGAACGTCACCTCTAAAGAGATCCGCACAGAGCTGGAGATGCAGATGACATGTAACCTGCGTGAGTTCAAGGAGTTCATCGACAACGAGATGATAGTCATCCTGGGCCAGATGGACAGTCCCACAGAGATCTTCGACCACGTCTTCCTGGGTTCGGAGTGGAATGCGTCCAATCTGGAGGAACTGCAGAACAGCGGGGTGCGATACATCCTGAACGTTACACGGGAGATCGATAACTTCTTCCCCGGGATGTTCGAGTATCACAACATCCGTGTGTACGACGAGGAGGCCACTGACCTGCTGGCCTACTGGAATGACACGTACAAGTTCATTTCCAAAGCCaaGAAGGCGGGGGCGAAGTGTCTGGTGCATTGCAAGATGGGCGTGAGCCGCTCGGCCTCCACGGTGATCGCCTACGCCATGAAGGAGTACGGCTGGGACCTTGGCCGCGCCTTCGACTACGTCAAGGAGCGCCGCGCTGTCACCAAGCCCAACCCCTCCTTCATGCGCCAGCTGGAAGAGTACCAAGGCATCCTACTGGCCAGcaaaCAGAGGCACAACAAGCTGTGGCGCTCTCATTCGGACAGTGACCTCTCGGACCTCCACGAGCCCCTGTGcaagcagcagcacagcctgGGCCCCAGGGATacccacaacaacaacaacaacaccccGTCGCTGGAGCACTTACTGGGCATGGCGGTGCTGCAGGCTCTCACGGGCTCCCCTGGCAGGGCGGACCCCGACGCAGACCCTGCTTCGCCCACCCTCCGGGACCCCTTCCTAGAGCAGCACGCCTCCAACGGCCTGTGTGAGCTCCCCCTGTCGGCCGCCGGGAACCCGCCTCCGCCCTCCTCCCCTCTGCAGACTAGCCGCTCGCTGCCGCTGCCTGCCAAGCCTCGGGCCTCCACCCTGCACCAGGAGAGGACAGACAACTCGCCCCTGGGTCCTGAACTGAAGCTGGACGCTCTGCCGCTGCCCATGATCCACGTGGAGAACACACGGGCGGCCAGCCCCCTGCCTGAACGCAAAGACTCTCTGCACCTGCCCATCCTTGTGCCCGACCTGATGGGGAACTCTCAGGTTGTCCCCGAGCCTGGCTCAGCCCGGCTGCAGCTTGCCCTGGGGGAGGGGGCTCCGAACAGTCCAGTGTCTCCCGAGACGCCCATGGCTGTCAGCCCCCTCAGCCCCCTCCCCGCCGCCCACGCCGCAGGACTCCAGGCTAGCGACGACGACGacgatgacaacaacaacaatgccgCCCCGCCCCCCTCCGCCTCCTCCAGCCTCAGCACGGATAGCATTGACTTCTTCAGCGCCCGTGAGAAGTTCCTTGAGCTGTCCCAGGACGCCCGTGCCCGCGCTCTCTCCACTGCCGCCTCAGCCGCCCACCCCGAAGAGCAGGCAGCCAGCCGGACGCCTCACTCCAGGGGTCCTAGCCAGGAGCTGCCTCTCCCTGAGGACCCAAGTGCCATACCCCCTGCAGAGGAACTGCCCAAGGATCCCCTGGCACCAGAGGCAGGCTGTGCCGTGCCGCGCTCGCAGTCTGAGAACAGCGTCTCGGTGCGGGACATCGTGACGGAACTGGAGTCCATCACCCACCCGCCCCTGCCTCCCCTGGTGGCCGCCCAGCGCAGGAGCACCGGGGGTGGGGACTCCGGGGAGCCCAGCCCCCCGCTCCTCCCGCCCGCAGACCTGGCCCCTGCTGCGGTGGAGCCCCAGGACTGCCCCAGCCCCCAGCCTGCCCCCAAGTGGCCATGCGGGTCAGTGCGGCGAGTGACCAAGGAGCTGGAACAGCGGCTGAAACAGGAGCTGGACTCCCCCCCGCCGCGACGGCACTCGAATCCCGAGCCCGCCCCCTCTGCCGACCCCGCCCGGCCCGGCCACGGCACGCCACCCTCGCCCCACGCCAGCCCCCCGCCCTCACCCAGGACAGCAGCCCCTGTCACACACAGGCCCGTCAGCCCAGCCGCCTGGCAAGCCTCCCTGGAAGAGCTGGAGGTGTTCACTGCGCGGGAGGAGGTGGAGAACAGAGACTCGACCCCCACGCCcgatctgtgtgtgtgcccagaGGCTGGCACGGACTCCTTCCTGCCTTCCTGCCCCCAACCGCCCCTGCCCTTCCTGCTGCTGGAGGGGGCGACTGAGAACTGCAGTGAAACGGACGCCCCACCAGCACAGGCCCCTCCCCGGCTCCAGCGCAGCACCGAGGAGCTGTGGAGGATCCAGGAGACGCTGCAGGAGCTGCGGGCCTTCCTGTGCGAGgcggggggccgggggggcggGGCCGGGGCTGGGGAGGGCACCCCAGGGAAGGTGAGGCAGCGTACCCTGGAGATTGAGGCCCGGATCAGGCAGGCCGGCCTCACGCCCCCCTCCCTCATGAAACGCTCCGCCTCCCTGGCCAAGCTGGGCTGCCTGGAGCTCTCCGCCGATGACCTGTCAGAGTGGGACCCCCACAGACTGTGCCCCGCCGGCCCCCAGCAGCCCAGGGACCCCCCCGAGGACGCCTCCAAGAAGCAGCGCGTGGTGCCCCGGCGCgagcccccgcccccccgccccagCGCCTGTCTCAGGGAGCAGCCCAGCCTGCCCACCTCTCCGCTCCGCGCCCCGGCCTCCCCAGAGAGGGGCGAGGGGTTTTCTCTCAACACTGGAGACGCCCCGCCCCCGGCCCCGTGTCTCGGCGCCCTTGCGGCCAGGCAGCAGCACGGCAGGACGCACCCCCTGCGGAGGCTGAGGAAGAGCGGCGACAAGAAACGGACTGCCAGCTCTCTGTACAACACCATGTGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05766 SSH; protein phosphatase slingshot

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194189 lncRNA upstream 46447 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 132264 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 132264 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 145964 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 168887 9021950 ~ 9071747 (+) True G154091
TU194291 lncRNA downstream 188663 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 653942 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 826477 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 1015443 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 1033684 10285514 ~ 10332094 (+) False G154447
AMCG00005750 mRNA upstream 59829 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005753 mRNA upstream 76418 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005752 mRNA upstream 100973 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005751 mRNA upstream 111789 9115471 ~ 9128845 (+) True AMCG00005751
AMCG00005749 mRNA upstream 148071 9083152 ~ 9092563 (+) True AMCG00005749
AMCG00005775 mRNA downstream 524 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005784 mRNA downstream 47755 9299585 ~ 9330590 (+) True AMCG00005784
AMCG00005783 mRNA downstream 94613 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005764 mRNA downstream 145295 9397125 ~ 9406873 (+) True AMCG00005764
AMCG00005763 mRNA downstream 173477 9425307 ~ 9427544 (+) True AMCG00005763
TU193852 other upstream 733559 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1010044 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 1974663 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2752014 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 4018719 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 184070 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 335972 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 629552 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 813330 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 828605 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037917 True 3540 mRNA 0.54 14 NC_007132.7 40443118 ~ 40475727 (+)
grasscarp (Ctenopharyngodon idella) CI01000072_04992647_05006768.mRNA True 4350 mRNA 0.52 17 CI01000072 4992218 ~ 5006768 (-)