RNA id: AMCG00005784


Basic Information

Item Value
RNA id AMCG00005784
length 7470
RNA type mRNA
GC content 0.52
exon number 19
gene id AMCG00005784
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9299585 ~ 9330590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTGCATGAGCCTACAGCAGGGTGATGTAGTGGAGAAGCTTCTCAGTGATCTCACTGCTTATTGTGGTCTGAACACCCCCTGGCTGCGACACTGAGCAGACGGAGAGACGGTGTGCAGGGGGGAAAGGAATATCTCTATGCCGAGTGAACATTAGGAACAAAAGTGCAGTTATTCCCcccacacgcagacacacacagtccccTCTCCTGCCCTCAATGACTGCGATTATTATTCAAGTTGTCTTCATAACCCCCGCCGCTCGGAAGGGACCCGCAACGTAAAACTGCAAAACCGGGGAATATCTGGCACTGAAGAGCGCGGACACAGCGACCGAAGCCAGGGCCGGGCAACCTGCTTCTGACGGCGAGGCTTCCGGGGGACTCGGCGCTGGCGCTACGGGAATTGGAGCCTTCGTGCGGGGAAAGAAAGACGACAGCAACGGGAAGGACGGCACACAATCCTGCGCACACACACCACCATGTCACGGAAAGTACCAAGAAGCGAAGTGTGTGCCGACTGCAGCGCGCCAGaCCCTGGCTGGACCAGTATAAACCGCGGTGTGCTGATCTGTGACGAATGCTGCTCGGTGCACCGGAGCCTGGGCCGCCACATCTCCATCGTCAAACACCTGCGCCACAGCGGCTGGCCTCCATCACTGCTGCAGATGGTGCAGACTCTGGCCAGTAATGGCGCCAACTCCATCTGGGAGCATTCCCTCCTTGACCCGGCGCAGGTGCAGAGCGGCCGCCGGAAACCCAACCCCCAGGACAAGGTCCACCCCACCAAGTCGGAGTTCATCCGAGCCAAGTATCAGATGCTGGCTTTCGTGCACAAGCTGCCCTGCCGAGATGACGACGGGGTCACCACCAAGGACCTCAGCAAGcaacTGCACTCCAGTGTACGGACAGGAAGTCTGGAGACCTGTCTGCGGTTGCTGTCTCTTGGAGCACAGGCCAACTTCTTCCACCCGGAGAAGGGCACCACTCCCCTGCATGTGGCGGCCAAGGCTGGCCAGGTGCTGCAGGCCGAACTCCTGGTGGTGTACGGCGCTGACCCTGGGGCCCCCGACATCAACGGCAGGACCCCCATGGACTACGCCAGGCAAGCAGGTCACGTGGAGCTGGCAGAGCGGCTAGTGGAGTGTCAGTACGAGCTGACCGACAGACTGGCCTTCTACCTGTGTGGGCGGCGGCCAGATCACAAGAACGGGCATTACATCATTCCTCAGATGGCAGACAGTCTGGATCTGTCCGAGCTGGCCAAGGCTGCCAAGAAGAAATTGCAAGCGCTCAATAACCGCCTGTTCGAGGAGCTGGCCATGGACGTGTACGACGAAGGTCGGCAGAAGCTGGCGCGGTTCAATGCCAGGGAGTTTGCCACGCTGATCATCGACATTCTGAGTGACGCCAAGAGACGGCAGCATGGCAAGGGCCTGACCAGCCCCACGGATAACCTGGATTATGGGCTGCGCAATCATGGTGATGCTGACGACCAGCATGACTACGACAGCGTAGCGTCGGACGAGGACACGGACCAGGAGCTGCACCGCACCAACAACACAGCCCGCAACAACCGCGCAAAGAGCATGGACTCCTCGGACCTGTCTGACGGGCCCATCACCCTGCAGGAGTACCTGGAGGTGAAGAAGGCCCTTGCTGCCTCCGAGGCCAAAGTGCAGCAGCTGATGAAGGTCAACAACAACCTGAGCGAGGAGCTGCGCCGCCTGCAGAAAGAGGTAGGGGGCGCTGGGGAGCAGGCATTCACGGGCCATCGCAGCCGGTTCAGACAGATCACCCGGATGCAGATGGAGAACAGCGCCATGCGGGGCCAGGCGGGGGGTGCCGGGGCCGGGGCGGGGCCGGGGCTTGGTGTGGGCGAGCGTGCGGAGTTGAGCGTGGCGCCGCCCCCCCGCCGTGACCGCCAGGCCTTCTCCATGTACGAGCCAGGCGCCCCCCCCAAGCCCTTCGGCCCAGCCGTGGACGTGCTGGTGGGCCGCCTGCAGCCGCTCAGCCCCAGCGTTCGGAAGGGAGGACTGACTGGCCCCTCTCCCTATAGCGCACTCCACCTCTCAGGAACATCAGAAGGAGGGAGATACATGTCTCACGCACGCTCGCTCTCCCTCCAGGGGCCCAAAGGGGAGAAGCATGGCAataGTGTGTCGGAGGGACGCTTGGGCCGGGGGAGCGAGGATGATTCCCgggcagagctggaggagggcGGCGACAGTGAGCCCGACCCCTCCCTGCCCTGCACTGAGGACGTCATCCTGAAGACCGAGCAGGTCACCAAGAACATCCAAGAGCTGCTGCGGGCGGCGCAGGAGTTCAAACATGACAGCTTCGTACCCTGCTCTGAGAAGATCTACTGCGCCGTCACCGAGATGGCGTCCCTCTTCCCCAAGCGGCCAGCCCTGGACGCGGTGCGCTGCTCGCTGCGGTTGCTGAGCGCCAGTGCCCTACGGCTGCAGAGCGAGTGCCGGAAGACGGTGCCCCCGGAGCCGGGCGTGGCCGTGGACTACCAGCTCCTCACCCAACAGGTCATCCAGTGCGCCTACGACATCGCCAAGGCCGCCAAACAGCTCGTCACCATCACCACCCGTGAGAAGAAACAGTGAGACgcggagagggagggagaggggctgggggggcagagagagagagagaggcaggcaggcagaggattgatggagagagagagagaaggaaggggTTGTTGTGAGAGATGAGGAGAGAGGTAGAAGGATGAGGAAAAAAGAGTGTGAGGATTGGTACTCTGAGAGAaggggggaaggagggagagatgcAGAGCAAGGTGAGGGAGTATCGCCAAAGTTACTGCACACTTGccaagacaaaagacaaaatcacAGGAGAGAAGggcattagagagagagagagagggagagggtgggaACAAAGGAataggcagagagagagaggggaggtgaGGAAGGAAGGTTGCTGGGAAAAGGGGagaggtcaggagagaacggtGGGGAGGACAGCAGAAACAGGCTATGAGATCCAGGTGGTAGTGTAGACCAAAGCAGTGTGCTCTCAgacctccgtctctctctctctcgctctctctctgggtcTCTTACTACAGAGAGTAACTCCCCACCACATCAACCACCCccccgtcacacacacacacaccctctcccCAGCTGAATCGCACACACCCCCAGGGTCTTTCCATGTGGCCTCACCCCACTGTGGACTTCCTGTGGAGTTTGTCAGTGAATATacagacagacggacggacggacagacagatgGCCTGATTTCCTCAGGGCTGCAGTACAGTGACTCTCTCATCCAGACGGCCGCCACCCCCACCCCGCTTTCTGAGGCGGGGAGAGGGCCTTCACAACACAGCCCGGCCTAAAAGCCCTCGCGGTTGGTAGTTCTGTTGTCATGGAAAGGAGGcctaaccttttttgtttttgtttgtggaaATATCTGTTGAACTGTACCTCTCCGGGACTAAAGTACTGACTAAAACActggaatttatttttacatgtttttttgtatcattattattattattgttgttgttgttgttgttgttgttgtattttttttttgttttgttctgaaaatGTTGTAAAAGGGGAGTTTGAGATCTCGCTGCTGTGGCtcacaggtttttgttttttcctgtgcgGTGTTCGTTGGTCATGGGAAACTCACGAGCGCTGCCTTTTGCCTTTCCACAGTCCTGCGCCTCCTTattaacatctcacagcagagGAACATTCCCACTAGAATATGATTTGATCCATTTTCAGGGGCATATAGGCTCTTATTTAACCTACCCCCCCTTTTCTGGATACCTCATGCTTAAAACCTTTCAGTTAGCAAACCTAGGCGCACCCAGttcaaatctgaaatgtattgctttttctgCTTCACCAGTACAACCTGTGGGTTTGAACTGCCCTGCAACCCGAGTCTTACCCGTTCCTCCGGGGGTAGATTGATTAGGCGATTGGTTGGTTGACAGTTTGGCTCACATCCCTCAGCAGCCATACGCCACCCAAGAGAAAGTTAACAAGTGACCTGTTGCGTTGCGCTGTGCGAGTGTTGGCTGTTTGATGTCGCGGAGGGTCACGCCTTCAGCAATTCAGCTTGAGTGTTTGAGTTTTAAgactgggatttttttttggaCGATCTCTGCCCGGCAGCACAGACAGGCATAACGCATTGCTCAAACTGGAGAGCAAATCTGCATGGCCTACTGGCGCCACCGTTAAAAACCGCACCAAACAGACTCGCTCTGCTGCTTCCTCCGTGCCGTGCCAACAGCTGGAAAACAGCCGCCATAGCACTGACTCTACTTGCTCTGTGTAGTTGATTTGAGCCTCTGtgtagttttattattgttgttatagaGCTTGTCCAGTAGATGTGAATGTGTCCAGTCAGCCTGTATGtcactgtttttctgtctgttttctctTTGCTCTGCCTTGAGAAGCCGGGAGTCCCATCTCTAAGCCTTATGCCTTCTCAGCAGAGGTTGTGAATTACCCTCTGctcttctcttttcttcccTGCGGGTCAGAAAGCCATTCTGTCTGAAGCCTAATGCTGTCCAGATGTAGTCAGGTGTTGGTGGGGCTGTGTGCCAGCTGTGTGCCTTCCTTTGCAGCCCTGCCCCGTTTGTGCCAAGTCAGTCTGACGTGTTTTGCACTGTGCCATCTCTCAAACCGCAGCTCTTGCCTCCTTGACTCCACACTCCCTGTCAGCCCTGGACAGCATCTAACAGTGGCAGACAGCCAGTCCTCATTCACGGCAGGTTGGCCGAGGCTGTAATCCATGGGAACTTGCTAAAGGATCACACGTATTGAACATCTCTGCACTTTGTGGGGGAGAAGTTTACAGCAGTCCAATATGGTTCTTTTTTTGAAGTTGTGACAATTGCTATCCAAGCTTGTCGGTCTGTCTCGTTCTCGTTCTCGAACTGTGCTTCCTTATTGCGGTCTCCTCTCTGATACTGTAGAACGTCTGTGGCGTTGTTCTGTGGGCGTTCTGGGggatagtttttttgttgtttttgttttaatatcgaacaacaaaatattgaaaaacttGGATGGGTGAACTTGAACTCCCAGCTGTCCCCCTATTATCTTGAGACACTACCCTCCCCTCCCACTTTTCACTACAGTTGTGTTTCAAGTCTCACTGTACTTACACTGACCACAATTCCCATACAAGCCTCAGGGCATCGGTGTCTGTATTGTGCTGTGAAGTGTAGATATGACTGCAGTGTCAAGGTGCCATTCTGTGGATCCCCTTTGCTGTGACTTGGAAGGTCATATACCATCCCGGCCAAACCACTTAGATGAAGATAGCGCAGCCAAATGCACATTCTCACACTCTGAAGCTGAAGTTGTGGTAGATTATAACTATTAAGTTATGCAGCTCTCAGCCTAACTCCTGTACACGACTGGCATTTCTGAATCAAACTTAAGcttgtattacaataataatcattatggCATTCCTGGAAAAGCTGGATATGTGTTCAGGCAGCTCAGGGAGGGGCTGTAAAGTGGCAGATAGACCGGTCATCGTCAGAACTAGGGGTGGAATAGTGCAGCCGCCAGAGTGGCCGATAGACCCAGACTCAAGCCACAGCGTCCcccacagtgtgtgtgcagactTGTGACTCCCACCGCTTCTTTTTTATGTCACACGACTGTAGAATGTGTATTGGGAATGTTTAGAGTACACAGTGAACTGGGTCTTTCATATCTGTCTGATCTCGCTCTATATATGTCCTTCTCCCTCCAGCTCATTGGGGGGGGGCGGTCAGCTCTCTATTTTTCCATGTGTTTCCGTTTGTTCTATTTCCTCCTGCTGTGGAAAAGCATTTGCCTCTCAGTGAGCTGTTTGTGGAGAGCTGAGCTCAGTCTGAGGCCACCTCTGTTCTGGTTGCAGATACAAAGAGCCTTTCTagagatttatatatttattcctcCCCACTCTTTTCTCGTTACAGTTTTCTCtgaccttttattttcttatgtgttttaatgtgatcTTATCTCAAAATTAACCCACGGACTCCCGAGCAGCAGGAGGGCAGCACACGGCCTGGTGCCTCTGAGTCATTGTAACGAGACGCGCAGAGGAACAGAACTGCCAAAGATCCACCAGATCACAACACTGTTTTCTGTGATGAAAGTGCGTCTCTTGTTGAAGTCGCTGCTGTGTGTGCGTCACCCTGGCTGTTCAGGAGCGCTCATGCAGCCGAGGCTCTCGATCTCCTCTGGCTCTGGTCACAGAATATAATCTTGGCGAGGGAGTCCCATGAACTGCTGAGCACCCCCTGCTCCAGTCAGGTGTGGTCTGGGGTGCTAGCCCAGCAAATCAGAATGCAGGATTCCTCTCcatgatgggggggggggggggagtctTATTAGTGTTTGTGGGGGAGTGTTGCCTGTTCCTCTCCAGAACAGTGTGATACAGTGTACAATCTGCtacaattgttgtttttttgggtgCCAAACTAAATTCCAGgtctttctctttattttttttattttattttaaatttacaaaaatactaaCATCGGGAATTAAATCCCCTTCACCATTCCTATTTAATTGGCTAGTCCTGTAGTTTGTGACTGCATGGAACTTCACAAAATCATTTTGTGATTTAAAGCTCTGAAAATTCCCTCCTGCAAACCCTGCCTATTTAAACAGTCTTTTAGATGGTATATTCTCCCACTTTGGGTCCCTGGAGGCAGAtagctgtgtttgtttgggAAGTAGGTGGTGGTTCCTCTTGGGCATTGACTGGTGTGCCCAGCTGACAGTGCCAAGGTCCTGTCCCACCAGATACCCTCTGCCCCACCTccccaaaaaaatatatgtgacCCCCTTAAGATAAATATTggtatatattttcagtatattttcttaaaactgttattaatatatgttGGAGCTATCTGAAACATGatattcgtttttttgttttagttttaatcatGAATCCATGTGTAAGGTATCGGGCAGGAAGTGACATGTGCACTTCTACTTAAGACCTGTCGCCAACCTGAGCGAGCAATAGTTTTGGTATAGTTTGTCCTTGTTGTTGCCTAGAAACAGAGCATACCAAACTGGGTAGTGATCACAGTTAAGAATCAGTTAATTACAGACTGTAGATAGAGACCTCCAGCAGTCTGTTTGTGTTCCCCTGTGGCAGGCATGACCCTCTGATAGAGAACCACAGTCCTAATGCCTGCTttgcatacatgcacacatacacacacaccctgctgtACTGCAGTGGTACTGCACTGTGCCATGTCCTTTGTCTGCTGTGCACTTGCATAGCCCTCTGTGGGAGAAAGGTGATGGGGAAAATTAAAAcgttaaaactgtataaaaaaaaaaaaaaaaaaaaaaagtaaactcaaattgtacatttgtaataaataaa

Function

GO: NA

KEGG:

id description
K05737 GIT1; G protein-coupled receptor kinase interactor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194189 lncRNA upstream 105398 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 191215 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 191215 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 204915 9093909 ~ 9094670 (+) True G154143
TU194085 lncRNA upstream 227838 9021950 ~ 9071747 (+) True G154091
TU194291 lncRNA downstream 109903 9440493 ~ 9441381 (+) True G154252
TU194391 lncRNA downstream 575182 9905772 ~ 9944143 (+) True G154343
TU194448 lncRNA downstream 747717 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 936683 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 954924 10285514 ~ 10332094 (+) False G154447
AMCG00005775 mRNA upstream 30349 9252354 ~ 9269236 (+) True AMCG00005775
AMCG00005774 mRNA upstream 47755 9240634 ~ 9251830 (+) True AMCG00005774
AMCG00005750 mRNA upstream 118780 9165033 ~ 9180805 (+) True AMCG00005750
AMCG00005753 mRNA upstream 135369 9159231 ~ 9164216 (+) True AMCG00005753
AMCG00005752 mRNA upstream 159924 9131037 ~ 9139661 (+) True AMCG00005752
AMCG00005783 mRNA downstream 15853 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005764 mRNA downstream 66535 9397125 ~ 9406873 (+) True AMCG00005764
AMCG00005763 mRNA downstream 94717 9425307 ~ 9427544 (+) True AMCG00005763
AMCG00005767 mRNA downstream 468407 9798997 ~ 9808730 (+) True AMCG00005767
AMCG00005768 mRNA downstream 530329 9860919 ~ 9868588 (+) True AMCG00005768
TU193852 other upstream 792510 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1068995 8215890 ~ 8230590 (+) False G153815
TU193523 other upstream 2033614 7260677 ~ 7265971 (+) True G153675
TU193227 other upstream 2810965 6487718 ~ 6488620 (+) True AMCG00005667
TU192781 other upstream 4077670 5214823 ~ 5221915 (+) False AMCG00005583
TU194290 other downstream 105310 9435900 ~ 9438269 (+) True G154251
TU194323 other downstream 257212 9587802 ~ 9589798 (+) True G154283
TU194377 other downstream 550792 9881382 ~ 9883955 (+) True G154330
TU194427 other downstream 734570 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 749845 10080435 ~ 10087692 (+) False AMCG00005802

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000072_04932845_04949502.mRNA True 2292 mRNA 0.57 19 CI01000072 4932700 ~ 4949502 (-)