RNA id: AMCG00005798


Basic Information

Item Value
RNA id AMCG00005798
length 1569
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00005798
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10043818 ~ 10052809 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCCTGCAGACGATCATAATATCTGGTGTGGGAGTCTGAACCCCTTCCCCCTGGCCTTCGGTGACGCTATCCACAGCAATCCATTAGTTTTCCTGGAGACAGGATCCAGCCCCCAGCCGCCTCAGCCTGTTTCCCCTGAGCTGGGGGGCCGTGGTAGTGGCCGGGGGGGTGGCTCCGGCCGGAGGGGCAGCCTGACCAGCATTGACAGTGAGACCTCAGGCTGCTCCCTCAGTCGGCTGGGCAACACCATTGCCAACGTCTCCAGTTCCTGGTGGGGGACAAAGCGGCTCGACTACGCCCTCTACTGTCCAGATGTCCTCACTGCGTTCCCCACGGTGGCGCTGCCCCATCTCTTCCACGCCAGTTACTGGGAGTCCACCGACGTTGTAGCCTTCGTGCTCAGACAGGTGATGCGCTGTGATTCCCTGAAAGCCAAGGAAGCAGATGGCTCCGACTCtgcccccttctctccctccagtCCCCGGGAGAAGTGGCTCCGGCGCCGCACTCACGTCAAACTGCGGAATGTCACTGCCAATCACCGAGTCAGTGACATCATCGCCACGGAGGACGGCCCCCAGACCCTGGTTGGCCGGTTTATGTATGGACCTCTGGACATGGTGACGCTCACCGGAGAAAAGGTGGATATCTTCCTGATGAGTCAACCGGCATCAGGCCGCTGGGTGCACTTCGACACTGAGGTCACAAACAGCAACGGGCGCATCTGCTACACTGTGCCCGATGGCAAGCGGCTGGCTGTGGGCGTCTACCCCATCAAGATGGTCGTCAAGGGCGACCAGACGAGCGCAGAGGCCTTCCTGACGGTGCTGCCGCGGGGGATGGAGTGTGTGGTGTTTAGCATCGACGGCTCCTTCGCCGCCAGCGTCTCCATCATGGGCAGCGACCCCAAAGTGCGCCCGGGGGCTGTGGATGTCGTCAGGCACTGGCAGGACCTGGGCTACCTCATAATCTACATCACGGGCCGACCGGACATGCAGAAGCAGCGCGTGGTCTCCTGGCTCTCGCAGCACAACTTCCCCCAGGGCATGATCTTCTTCTCCGAGGGGCTGGTGCACGACCCCCTGCGCCAGAAGACCATCTTCCTGCGCAACCTGGTCCAAGAGtgtcacATCAAGATCAGTGCGGCCTACGGCTCCATGAAGGACATCTCGGTGTACAACATGCTGGGCCTTGGCCCGACACAGATCTATATTGTGGGCCGACCGTCCAAGAAATACCAGACCCAGTGCCAGTTCCTGAGTGAGGGCTACGCCGCCCACCTGTCCACACTGGAGTTTGGACACCGTGCCCGGCCCAAGAAAGGCTCGGCCCGCATGGTCCTGCGCAAGGGCAGCTTCGGCCTGTCTGCGCAGCCCGACTTCCTGCGCAAACGCACACACCTGCGCCGCACCATGTCCGTGCAGCAGCCTGACCCGCCCCCCACTCCCAACCCCAAGCCTGAGCGTGCGCAGAGCCAGCCCGAGTCCGATAAGGACCACGAGCGGCAGCCTGGCAGTGGGCTGTGGGTGCGGGGGTCCATGCACCGCGGGGACACCACCCCCTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24069 PITPNM; membrane-associated phosphatidylinositol transfer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194391 lncRNA upstream 99675 9905772 ~ 9944143 (+) True G154343
TU194291 lncRNA upstream 602437 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 849631 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 935448 9100429 ~ 9108370 (+) True G154147
TU194448 lncRNA downstream 25498 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 214464 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 232705 10285514 ~ 10332094 (+) False G154447
TU194535 lncRNA downstream 250148 10302957 ~ 10303497 (+) True G154451
TU194536 lncRNA downstream 251409 10304218 ~ 10304909 (+) False AMCG00005851
AMCG00005799 mRNA upstream 10996 10020967 ~ 10032822 (+) True AMCG00005799
AMCG00005806 mRNA upstream 75671 9946752 ~ 9968147 (+) True AMCG00005806
AMCG00005807 mRNA upstream 100494 9941462 ~ 9943324 (+) True AMCG00005807
AMCG00005808 mRNA upstream 122748 9907846 ~ 9921070 (+) True AMCG00005808
AMCG00005768 mRNA upstream 175230 9860919 ~ 9868588 (+) True AMCG00005768
AMCG00005802 mRNA downstream 23536 10076345 ~ 10089769 (+) True AMCG00005802
AMCG00005934 mRNA downstream 79319 10132128 ~ 10136716 (+) True AMCG00005934
AMCG00005928 mRNA downstream 154511 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005927 mRNA downstream 207840 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005929 mRNA downstream 214464 10267273 ~ 10271460 (+) False AMCG00005929
TU194377 other upstream 159863 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 454020 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 605549 9435900 ~ 9438269 (+) True G154251
TU193852 other upstream 1536743 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1813228 8215890 ~ 8230590 (+) False G153815
TU194427 other downstream 12351 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 27626 10080435 ~ 10087692 (+) False AMCG00005802
TU194579 other downstream 409728 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 417734 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 459695 10512504 ~ 10516390 (+) True G154499

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018209 False 4859 mRNA 0.48 20 NC_007126.7 26678834 ~ 26844591 (-)
grasscarp (Ctenopharyngodon idella) CI01000072_01272628_01318779.mRNA True 3356 mRNA 0.53 19 CI01000072 1272530 ~ 1319079 (+)