RNA id: AMCG00005808


Basic Information

Item Value
RNA id AMCG00005808
length 1872
RNA type mRNA
GC content 0.59
exon number 13
gene id AMCG00005808
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9907846 ~ 9921070 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAGGGGGCCTGGCTATTATGTGTACTTGGCAGCGGCTGAGAAGGGCCCCTTGTTCTGCCGAGGGGTGAATACAATGCCCCTCACCTTCCCCTCCCcagcctccctgcctccctgcctccccCAGTCCTCCCCTGCAGGGCTCGCAGAGAAGATGGCACCGTTATGGAAAGTCCTTTGGAAGCAGAGGAATGCGTTTGTGCTCTTTTTCACCCCGTTTCTCCTCCTGCCTCTACCTCTTGTTGTCCAAACAAAGGAGGCGAGCTGTGCTTACGTGATCATCCTGATGGCGGTGTACTGGTGTATGGAGACCATGCCCCTGGCTGTGACCGCCCTGCTGCCCGCTCTGCTCTTCCCCATGTTTGGCATCCTGCAGTCCAAAGAGGTGTGCATGCAGTACCTGAAGGACACCAATATGCTGTTTGTGGGCGGTCTGATGGTGGCCGTGGCTGTGGAGCACTGGAACCTGCACAAGCGCATCGCCCTCAGAGTGCTGCTCATCGTGGGAGTGCGGCCCGCACTACTGATGCTGGGCTTCATGGGTGTGACGGCCTTCCTGTCCATGTGGATCAGTAACACGGCCACCACAGCCATGATGGTGCCCATTGTCCAGGCCGTGCTGGAGCAGCTCAACAGCAACGACGCTGAGATGCCGGAGATCCACAGCGGGGACGACAGCGAAACGCCGACCAAACCCAAAGATGACCAGGTGGTGGTGAATGGGCTGAGTGCGTCGGAGCCCAGTCAGCACGATGAGGCGTTGGAGAGGAGGAAGATGTGCAAAGGCAtgaccttgtgtgtgtgttacgcGGCCAGCATCGGAGGGACGGCCACACTCACTGGCACTGGGCCCAACCTGGTCCTCAAGGGCCAAATGAACCAGCTGTTTCCCGAGAACGGTGATGTCATCAATTTTGCTTCCTGGTTCGGGTTCGCCTTCCCCAACATGATCCTCATGCTGACCATCGCCTGGCTCTGGCTGCAGTTTGTCTTCATGGGATTCAACTTCAGGAAGACGTGGGGCTGTGGGGCGGAGAAGTCGGAGAAGGAGGTGGCAGCATACAACGTCATCAAGGAGGAGCACCGGCTGCTGGGGCCCATGGCGTTCGCCGAGATCAACGTGCTGGTGCTGTTCACCCTGCTCATCGTGCTGTGGTTCACACGCGACCCCGGATTCGTGCCTGGCTGGGCCACTTTCCTGTTCAACAAAGATGCAGAGTACGTGACTGACGCTACGGTCGCCGTCTTCATCGCAGTGCTCCTCTTCGTCATCCCCTCCAAGAAACCGCAGCTCTGCTTCTGGAGGTCTGAGAGCTACCAGACAGagcaccagagcaccagtTCAGCTGCTCCTCTGCTCAGCTGGAAGGTGGTGCAGAAGAAGCTGCCCTGGAACATTGTGCTGCTGCTAGGGGGTGGCTTCGCACTGGCCAAGGGCAGCGAGGAGTCAGGCCTGTCTAAGTGGATAGGGAACCAGATGACTCCCCTGCACACCATCCCACCCTGGGCCATTGCCATCATCCTGTGCCTGCTGATCGCCACCTTCACCGAGTGCACCAGCAACGTCGCTACTGCCACACTCTTCCTGCCCATCCTGGCCTCCATGTCGCAGTCCATTGGTATTAACCCCTTGTACGTGATGGTACCCTGCACACTCAGCGCCTCCTTTGCCTTCATGCTGCCAGTGGCCACCCCTCCCAACGCCATTGTCTTCTCCTACGGCTACCTGAAGGTCTCCGACATGGCGAAAACCGGGATCGTCATGAACATCATCGGCATTGTGTGCATCACCCTTTCCATTAACGGCTGGGGGAGGGCGATGTTCAACCTGGACACCTTCCCTGCCTGGGCCAACACCACCGGGGTGTGA

Function

GO: NA

KEGG:

id description
K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194291 lncRNA upstream 466465 9440493 ~ 9441381 (+) True G154252
TU194189 lncRNA upstream 713659 9192296 ~ 9194187 (+) True G154175
TU194153 lncRNA upstream 799476 9100429 ~ 9108370 (+) True G154147
TU194154 lncRNA upstream 799476 9100429 ~ 9108370 (+) False G154147
TU194149 lncRNA upstream 813176 9093909 ~ 9094670 (+) True G154143
TU194448 lncRNA downstream 157237 10078307 ~ 10079436 (+) True G154388
TU194520 lncRNA downstream 346203 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA downstream 364444 10285514 ~ 10332094 (+) False G154447
TU194535 lncRNA downstream 381887 10302957 ~ 10303497 (+) True G154451
TU194536 lncRNA downstream 383148 10304218 ~ 10304909 (+) False AMCG00005851
AMCG00005768 mRNA upstream 39258 9860919 ~ 9868588 (+) True AMCG00005768
AMCG00005767 mRNA upstream 99116 9798997 ~ 9808730 (+) True AMCG00005767
AMCG00005763 mRNA upstream 480302 9425307 ~ 9427544 (+) True AMCG00005763
AMCG00005764 mRNA upstream 500973 9397125 ~ 9406873 (+) True AMCG00005764
AMCG00005783 mRNA upstream 558425 9346443 ~ 9349421 (+) True AMCG00005783
AMCG00005807 mRNA downstream 20392 9941462 ~ 9943324 (+) True AMCG00005807
AMCG00005806 mRNA downstream 25682 9946752 ~ 9968147 (+) True AMCG00005806
AMCG00005799 mRNA downstream 99897 10020967 ~ 10032822 (+) True AMCG00005799
AMCG00005798 mRNA downstream 122748 10043818 ~ 10052809 (+) True AMCG00005798
AMCG00005802 mRNA downstream 155275 10076345 ~ 10089769 (+) True AMCG00005802
TU194377 other upstream 23891 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 318048 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 469577 9435900 ~ 9438269 (+) True G154251
TU193852 other upstream 1400771 8504195 ~ 8507075 (+) False AMCG00005720
TU193739 other upstream 1677256 8215890 ~ 8230590 (+) False G153815
TU194427 other downstream 144090 10065160 ~ 10076502 (+) False AMCG00005802
TU194450 other downstream 159365 10080435 ~ 10087692 (+) False AMCG00005802
TU194579 other downstream 541467 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 549473 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 591434 10512504 ~ 10516390 (+) True G154499

Expression Profile