RNA id: AMCG00005820


Basic Information

Item Value
RNA id AMCG00005820
length 1551
RNA type mRNA
GC content 0.63
exon number 9
gene id AMCG00005820
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10412525 ~ 10416137 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgcccccccccacacactgccTGCGGCGCACAGCAGTGAGGTATTACACGGCTCTGTCCAGCACTAACCCTGCTGACAAGCAGCCTGTTCACAGAGGACACCGAGTCACTAAACATTACATCTGcttgtccctccctccctcctctttctctgcagCTCAAATCGAGGTGATCCCATGTAAGATCTGTGGAGACAAGTCGTCGGGGATCCACTATGGTGTGATCACCTGCGAGGGCTGCAAGGGCTTTTTCCGGCGCAGCCAGCAGAACAATGCGATGTACTCGTGCTCGCGGCAGAGGAACTGCCTGATCGACCGCACCAACCGCAATCGCTGCCAGCACTGCCGCCTGCAGAAGTGCTTGGCGTTGGGCATGTCCCGCGATGctGTGAAGTTCGGCCGCATGTCCAAGAAGCAGCGTGACTCTCTGTACGCCGAGGTGCAGAAGCACCAGCAGACGCAGGAGCGTGTGGGGGGCGGCGGTGGCCGGcgcgaggaagaggaggaggagggggccgATGGCGCCGGCAGCGGAGGCGAGGGGGGGGCCCCGGCCAGGGCCTACAGCAGCGGCTCCAGCGCGGCACTCAGTGACCTGGACGACCTGGCTACGCTGCCCGACGGCCTCCTCTTCGACCTGCCGCTGACCCCCGAGGGGGCGGGTGGCTACTGCGGGCTGGACCTACTGggctctgcgcagtcctccCCCGAGCCCGGACCCCTAGACCTGGCCGACAGCagccacctcctccaccaccaccaccaccacctgcaCCACCTGCACCACACCAGCAAACTGGATTGCCAGCTGCTCCTGCACGAGCCCGGCCTGCTGTCTGTGCATACACACACCCTGCTGAAGACCCTGCCCGAGGACTGCTCCCTGCTCGATatcgagcGTGTGACTCAGAACGTGCTGAAGTCCCACCTAGAAACGTGTCAGTACAGCGGCgaggagctgaagagactcACCTGGAGTGTCTACACACCGGAGGAGACCCGGGCCTTCCAGAGCAAGtCTGCGGAGGCCATGTGGCAGCAGTGCGCTCACCACATCACTAACGCCATCCAGTACGTGGTGGAGTTCGCCAAGAGGATCTCCGGCTTCATGGACCTGTGCCAAAACGACCAGATCATCCTCCTCAAAGCAGGCTGTCTGGAGGTGCTGCTGATCCGGCTGTGCCGCTCCTTCAACCCCCTGAACAACACGCTGCTGTTTGACGGGAAGTTCGCCAGCGCCCAGCTCTTCAAGGCCCTGGGCTGTGAGGACCTGGTGGGTGCAGTTTTCGAGCTGGGCAGGGCGCTGTGCCGGCTGCAGCTGTCGGAGGAAGAGATGGCTCTGTTCAGCACCGCCGTGCTGCTGTCCCCCGACCGACCGTGGCTGACTGACACGCAAAAGGTGCAGAAGCTGCAAGAGAGGGTGTACCTGGCACTGCAGCACTCCCTGCACCGCAGTGGCGCCAGCGAGGAGAAACTTGCCAAGatggtGTCTAAGCTGCCGATGATGAAGTCAATCTGTAACCTGCACATCGACAAGCTGGAGTTCTTCCGG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194520 lncRNA upstream 56281 10267273 ~ 10356244 (+) True AMCG00005929
TU194528 lncRNA upstream 80431 10285514 ~ 10332094 (+) False G154447
TU194527 lncRNA upstream 83526 10328035 ~ 10328999 (+) True G154447
TU194536 lncRNA upstream 107616 10304218 ~ 10304909 (+) False AMCG00005851
TU194535 lncRNA upstream 109028 10302957 ~ 10303497 (+) True G154451
TU194560 lncRNA downstream 3769 10419906 ~ 10489854 (+) False G154473
TU194561 lncRNA downstream 24930 10441067 ~ 10489854 (+) True G154473
TU194598 lncRNA downstream 107830 10523967 ~ 10526052 (+) True G154505
TU194687 lncRNA downstream 159842 10575979 ~ 10576437 (+) True G154574
TU194696 lncRNA downstream 251861 10667998 ~ 10668261 (+) True G154583
AMCG00005851 mRNA upstream 107688 10297889 ~ 10304837 (+) True AMCG00005851
AMCG00005929 mRNA upstream 141065 10267273 ~ 10271460 (+) False AMCG00005929
AMCG00005927 mRNA upstream 151060 10260649 ~ 10261465 (+) True AMCG00005927
AMCG00005928 mRNA upstream 194200 10207320 ~ 10218325 (+) True AMCG00005928
AMCG00005934 mRNA upstream 275809 10132128 ~ 10136716 (+) True AMCG00005934
AMCG00005819 mRNA downstream 6972 10423109 ~ 10428966 (+) True AMCG00005819
AMCG00005817 mRNA downstream 15426 10431563 ~ 10436502 (+) True AMCG00005817
AMCG00005821 mRNA downstream 46698 10462835 ~ 10469406 (+) True AMCG00005821
AMCG00005818 mRNA downstream 64073 10480210 ~ 10486749 (+) True AMCG00005818
AMCG00005858 mRNA downstream 86370 10502507 ~ 10502822 (+) True AMCG00005858
TU194450 other upstream 324833 10080435 ~ 10087692 (+) False AMCG00005802
TU194427 other upstream 336023 10065160 ~ 10076502 (+) False AMCG00005802
TU194377 other upstream 528570 9881382 ~ 9883955 (+) True G154330
TU194323 other upstream 822727 9587802 ~ 9589798 (+) True G154283
TU194290 other upstream 974256 9435900 ~ 9438269 (+) True G154251
TU194579 other downstream 46400 10462537 ~ 10468351 (+) False AMCG00005821
TU194578 other downstream 54406 10470543 ~ 10471631 (+) True G154486
TU194591 other downstream 96367 10512504 ~ 10516390 (+) True G154499
TU194711 other downstream 306195 10722332 ~ 10730209 (+) False AMCG00005834
TU194757 other downstream 497260 10913397 ~ 10915729 (+) True G154636

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019617 True 2017 mRNA 0.43 11 NC_007127.7 17913945 ~ 18088024 (+)