RNA id: TU191523


Basic Information

Item Value
RNA id TU191523
length 8866
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G152111
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1245031 ~ 1253959 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgAGTGAGATTTTATAAgtctgtgtgggttttgtaTGTACCTGCGCACATTTAGCGTGCACAACTGCCACCCTTTCCGTGTTATAAGCTGTTTTATCGATCGATGGCTTCTTACAACGTAGCTGATTTTTAGATTTCTTTTATCGCCATATCTTAAAGACGTATGATAGATGATTTCAGTATAtatggatttctttttttttttttcgttttgcttatttataggtgctgtatttttaatttgatgtctcttatttttgtctgtttgttatgGAAGGGATTATAAGGGGgcaaattaccttttttttttttttttttttttagactgaTAGACTGCCGGCAGTATTGCGATATATTTACAAGATGTAGTTgtcatacatgtatattaatgaaTTCTGAAGATTATTTTGACAGTgtcatttatattgttttaagagaaaaaagaaacagctgatgatgatgatagcATTATATGGTGCATTCGCAGTTCATGATTTAATGTTACaggttttacttttcttttgtgcgtgtttctgttctttttctgtCCGCGTTAGAACTCATTTCAACGATATTTCAAGATGGCAGAAGTACAGAGCGCTTGATTGGACTCCAGTCGGATGTTGATAagtggttttgtttattgttttgaagtTGTCGGTTTagttcttctgtttttcctcctcctcacccCTTCGGAGACGACGTACTGTTTCCTGCATGCTGTGTGTATCTTTCTCGGAGACCGTCGTCTCTCTCTTACCAGTGGCGCCATCTTGCACCTGTCCGAGTGCGGCGTTCCGTTCGCTCCGCACCGCTGGGCTGCTGCCGTTTCGACTCCTTCggcttgtttttggtttgaacTAAACACTCCGTGTCAGAACCGAACAAgaaccaaacagaaaacaataatccTCATCAGAATAGCCTGCTGATCTGTAGCGGAGGCAGGGTCCGGTGTGTTGTGGCCAGTCGGTGCAGCCCGTGGGGGAACAGCGCAGTGCTGGGCAGGGCCACCTCAGTTTAGCTAACGTCTGACGCTGAACAAGTCTCCCTCGCATGCAACACCCAGAACCTGTTGCATACGGTCAGTCCAGACTGCAGACTTACTTTCTATCTGCAACCggccagggagagagggacagagatggatggatagatcgagagagagagagagagagagagggcgaggcCGAGGCCTTTGGATTTGCACATGGTTCCCGATCAGGCTGAGGTGAGTGGCGCTGCACAAGACTGTAAGCTGGGTTCTGTAAGCCGGAAACCATATACGTGGTTTATTAAATAATCCTCCGTTTTGCCGTACATGACAGAGATCTTCAGCGGTGACTCGGCCGAGCCGTGTCCATGTCCGTGGCGACCGATTCGATTCGGTTGCATGGTAAACACCAGTGATGCTCTGCAGAGCGGTGGTCCGAGGAGAGAGATGCTGAGCCGTACagagtttaaaacaaagctTTGGCTCGAGCGCAGCACTGTTGCAGAGACATCCCTCGGCCCCCCTCCCCATCGCTCAGTCCTCAGTGTCTTAACACGTGTCACCCACTCCATCTAGTTCACATGAACACATTCGAAATGAATTTttaggatttttgttttttagaaaatacttttttaaaatagCTGTTGTAAATAGGATGCGAATTGTTTATGTACTTTATGATGTTGTTTACTTACGGTGACTTGCACGTCTTTGGAAAAttgttttgagaaaataataacGACTCAGTCGAGATGCATGTCGGCACAACGCCCGGCCTCACCTCTCGCGGCTCACGGTGTTTCAAGCACAAGCGCTGCGGTCCACACCTCTGCTCCGAGAGgcaattttttaaatcatattctaGCTCGTTATGtatgcaaatattattttagacCACTGGCAGGTTATAGTTTAAGTTTTACATCCGTCTGAGTCTTTAATATCCCTGCCATGTTCAGTAGAGCTACTGATTGATAACTAGATGTATTGATCCCAGACGTCTGATTTCCCAGCACTTCCTCCCTGTCCAGGTCCAGAACCTCTCTCAGCTGCGGTTCTGGCTCTCAGGCACACGGGTCCCACCTCCCTGAGCCCGCGTGCAGAAGCCAACGCAAAGCACTTAATTAGCACTTAGTCCGAGTAGCTCGGTACCGGGCGCTACCTAGTTGGCATTTCCAACTCGGAGCCAGACGGGGGGGGTGACACAGCCTCTGGGAGAGCATGCCTTGACTCACGGTTGCAAACCGGACCCAACCACAGCCCACACCCTGGCCTGGCCCGGCCCGGAGGGCGATGTGCCTTTAAGCGCGTGGTTACAAACCCGCAGCACTTCCCCGCGGCCCGGCCCTCCCGTTTGCAAAGCAAGAGTAATGCAATTACTCCGGAGCGGAAGGGCCGAGCGCGGCATCGTCAAAACGAAGCACGACCCCGGAGTGAGCGTGGCCGGACCGGGCCCCTGCTCTGGGCGTCCAGCCGGCCGGGTCCTTTAAACACATTTGCCTTTCACACATTGGTTACAAACCAAAGCTCTCCCAGAGCCCTGAACTGCCCACCCCCTCTGCGCCACCACTCCTCCTGCCAGCCACGCCAAGATACCAGCCAGGGCTTCACAGGGCTTAGGGCCAGGGGTTCCCGAGGCCCCGTCCCCACAGGGCCACATGCTTCCGTTCCCCATTCTCACGCCTCCCAAACTGCGTCACTTTCGCACAGCGGTCGGCTGCGCATGCTCCAGAGAAAAGCAAATGAAGATCGGAGGGGAACAATGGCATGCTTGATTTTATTCAGAcggagggtgagggagagatgCACTCGTCTTTGTGTCCAGCGATCGTTCAGTTAAACACTTAAACAGTTTCTTAAAAGCACAATACATGAAAGTGGTTTGATTGTTGTAGGTTAGTTAACGCACACTGCACACCGCGGCAGTTCACCTCGCCCTGCGCAGGTAGTGTAGCCCTTCTGACTGACTGACGTTGCTCTTTCCAGTCTGtgtatcaatataaatatacaaatgatttttgttattgtttttttaatgccgTGTTTAAAAGTCCCATTATTCGAGTGAAGCACTTAAGCGGTCTGAGAGCGTGTTCTCCAGGCTGTGAAGTCAGCCATGTGCCTTGAAGCAATCCAGGCCTTGTGCAGTTTTGAGGTTGTTAATGGATTGCTCTTTAACTAATGCAGTAAGAGGGCTGAAGAACCTGCGTTTGGGGAGTTTAAACCGTTCCTTCCTTCAGCCCAGTTCCCCCAGCATGTCCGTGTCGGGCTCGTACTCAACATCCACAGTCTTGTGCAGTCGCTGCCACCTCTAGAGTCTGAGCTGAACCCCGTGTTCCTATCCGTGTGCAGGAGATCGAGAGGATCATGTACACGCCACGCCACTAGCAATGCCCGCCTCCAAAAACAACACCCGTGGCGAGTGCGAGTTTGGACACGTGTCTCTACAAACGATCACTAGCTGATGAGAGAGACCGAACCCAGAATCCTCAGGTCAGACTTGACATTCAGTGTCGACGATTTAAACTTCATTTGAGAAATTCAAACCAGTGGTGTTTTTGGGGAGCAGGTTTATTTGTGCGGGATGGTGCTAATCTAGGAGTCGGCCTGCAGATCTGCCAGTAAAAGTGAAGCCTCCTGGAGCCAGTCTGGTCAAAGAGCTTCTCTTGTCATTAGCATTGTAACTATTTattagtttgatttattttgtttaggtttgtttcacctttttttctttcaaagtagATCTATTAGTTAGGTGAAGGACAGGGCAGTGAGCGGCCCTGCGGCGCCGGGGCCCGGGGCCTCTGTGAGTCCGCAGGGCCGAGTCAGGTGACCAGTGCCAGGCGGGTCAGGCAGCCACTGTAGCCTTTTGTTCAGGGAGTCTCTCAGAGGAGAAGGATGTCACTCCCTGTCGTGGCATTGATCACAGCACACGGGTCTTCCAGTCGCTCTTCATCACTGACAcATGTGTGGTCACGTGTCTGTATCAGGGGAGAAGGAGGGGATTGGGTGCGAGTCCAGTGTGGATCCTGGGGAGGGAGGTTGAGTCCACCTCGGGTCCACCTCCGTCCCCAGCCGGCGGAGTTTGAGAGCTCCAGACCTCGACCCCCGCGTGGCCGGACACCTGGCGGGGCTTAGGCTGTGGTTTGGTTGTGATCAGAACTCTGCCTTCCGCTTGTGGGAAACCGAATTTATGCAAAACCCCGACATGCTCGCATCGGTAGGCAGAGACCGCCGCGTCTCTCGCCTCCGTGTCGTCCTCGCTGTTCTCACTCGCCAGGATTAACGGTCTCCGAAGCCGCTGCCCGGCGCACACCTTCCGCTGTGCGTCTGTCCTTCTCTGACTCACAGCTCATCGCTTCAGGGACGGGCTTTGGGCACTCTGGCCGACCCAGTACCAGAGGCATGCCGGCCCCCCAGTGTGCGTCTGATCCCTCTGTATCTGGATCATGGGAGCGGTTTGTTCCCAGTGCGTTCATTCCCGTTGCGGTTACCGTGTTGTGCTGCGAAGGATTGTCCGATGTTGGCGTTTCAGTCACTTCAGACCCACCATATTGTCCCTCGTTGCCGGTGCTCCTGCCCTCGTGCTGAGGGGCTCCGGGGGTCCGGGGGTGCCGTCAGTCAGGTGAATTACGGTCACACAGTGCTGTGGGGGGGTGCGTCGGCAGCCCAGCGTCCCTCACCAGCAGGAACTCATTCAGTATCACTTACATTTCTGCAATATCATGTGCAAGGACCAAATCGCCTGTGATTGACATGGAAACCTTGAAGTTTTATTAGTTAGAATAgtttgaagttgttttttttgtttttgttttttttatatatatctatatatctatatatatatacacacacactctatttTAAGATACATATGTAAAAGAACAATTTAAAGCATATCAACATTACCACCTCTAGAACGAGATGATATATTTGTGCGTTTTGTCTGTTGTACGGGGTTTGTCGTCTCGCGGAGGTCAGCGCTAGTCGCGTCTCTTGTGTCTCAGATTtgatttttaactttattttcgTCATTGCTGTGGCAGATATTTCACTGTATTGGTCCCTATTTTAGATGTGCACTCATCTGTAGTTGGTCTTAGAACGGGTCATGATGAAAAGTCATCTTATTACGAGTAGGGGGTAGCTCCTGTCGCTGTCCAGAAGCAAGCACCCAAAGTTACACTGGTTTATATACTAAAGGGCATTTTAGGCATTTTCACAATAAACCAACCAACACACTTTTCTCCGCATCGTTGGCTCTTGGGATTGCGATGATGGACGTTGTGTATCCATAGCTTCAGAAGGAAAGGTTTTCACTCTTGGACGAATCTTATTTGTGTGATCGATAGGCTTTTTTTGGACAAAATTTAGGATTTTGCCctttgcaaatatttttctatagAAATGACTCAAATTACTATAGAGATTCTATACAGTGTCATATACAAATGTACAGATAAAATATATCCTGCGAAAGAGTTTCTTCAAGTTGTTAAACGTTTCTacgggttgttgttttttgttttgggttttttcttGAAGTATTGAAGCTGTCTTGAGGGGCGGCGCCGGGCCGCGCTCGGGTCGCCCCCTCAGGGCTGGGAAACACCAGACAGGCTGTTCTCTGAGACTCGGGCGAAGTCCGCTCTTACACGATGAATTTCAGGACAGAAAACACGTTGAGAAAACGAGAGCTTGAACCCATTAACTTTGAACGCGGATTTGCATCCAGCCGCGTCCCACAGTTGTTTCTTCAAGCCTGGCTGGCTTCTCAAGGTCTTTCGAGTTGTTTTCCACAGGCGTTTGTTTTCCCCTCTGTCAGCGGCTGGAAGCAGCACGTGTGACGGCGGAGTCGGTGCCCCAGGCTGGCGTGTGCCCGTCCAGCGTTCAGCGCACGGCGGTTTGTCAACGCGATGCACTATGCTGTGGGGTTCAGGCCGGGGCTGGGGTTGCTGCTCTTCACGAGTTATCCAGGGAGGTTTATTTACAGAggggtttgttttttgcaggcagcggtgggtgggtgggtgtgtgtatgtttgtgtgtctgagagtgagtgtgagtgttgTCCACCCGCTCCACCCCCGCTGTCTGAGCGAATCGTTCATTTCACCTGAGCTGCTTGTGTTCCCGTGACTCCCGGTGGCTGTTTGGGTTTGTGTCTTGGAGGAGTGTTGACTCACCCGTCCGGCTCAGAGCTGAGACAGGGACTGTCCCTGTGGCCGCTGTCCCTGTGCTGGGGGACGGGTCCGCTGTGGCCATGAGGATGGCTGGCGCCGTGGGTTCGGGTGAGGTCGGCAAACCAACAAGAGCTCGATGTCTACCTGTCACTCCTAGGGGTTGGTTGGTTATCAGATACAGAAGGCAACACCACGGGGTAAAGATCCAGGACACGACTGTCCCACGTTGAGACGTTTTCATGCAATAAACGGTTGGctaaccccctcccccaatcTGTGTGCCCTCTGTGGCCCTTGTAGAGAGAAGTAAAGCACTCCTAGAGCCGGTTGAGCCACTGCTGCCGGCCTGCTGGCTTATCGACCCCTGCAGGCTCCAGATCACAGTGCGGGAGCaactcagcagcagcagcagcagcagggcggCAGTGTCGGCCGTCTGAACCCCGTCCCCACAGATGATCAGCTCAGCTTGTAGACCCGTATTGTCAAGGCCGATAACGGTTCCTCTGTTGCCAATTACAACAGTCAATTACACCCTCACTGCCCAGTGCTGCCCAGGCGtgcacaaactcacacacacacacacacacattcacatacacacagccagGTGGGGACATCAAGCACCCCCCACCTTCCCCACAATCTACAATATTTGTTTCCTCTGCTCGTGTGGACGGGGTTCTGACGTGCGGCACTGCGCTCTGCTTTCTTCCCCCGAGACACCACAGTGTCTTTATGCAGCCTGAGCAAAATTGCGCCCGCCAGTCAGTCAGGGTTAAGGGGAGCCCAGCAAGACTACAGCTCCCAGAGTgccttgctgctgctgccgccacCTTTGCTCGCTCTGAAGTGCCAATCTGTGGTCTGCAGGGATCTGGCCGACCCCTTCATCGTGCGAATTGGATTTGAATGCGTCTTGTTGTCTGTCCGCTCCCTGCTGTGGGGTTCGCTGAGCCCTGTCACTCACAGCTCACTGCCTGGTGCATCTCTGGTCTGTTGGGGAGCGTGGGGGGGACCCCTCCCACTAGTTCGGCACggtttgtttctttcaatttaactcgatttggttttgtttcactttatttgCTTTCCTCTCGGTTTGTCATTTTCTTGGCCGTGTCCTATTGGAAAGTCTTAGGCCTTTGTAGACGGTTGTTGTACCGCGATTTGCATCGGAGTTGTAACGAGCTGACCGCCACCGCTTTCACCTTTTATcactttactactactactactactactactactactactactactactataccAGATTTATAAGCCGTCTTTTTTCTAGAAGAATATTTTTCAGCTGATGACTTAGAGACAGGGACACTACTTTTATCAACGGTGAAATAAGGGGCCACGCTCGCTCACAACGGCAAAGTGACAGAGGTCTCCAGCCCTCCTGTAAAAGAATTGGCAGCCGAGACAGAGACCCATAGAAACGGGTGACCTGCCTGCCACTGACCGGCCCTTAATATCGGGTCCTCCGGGGCCCTCCACGTCCGGACCTCTTTCAGACACGAGTCCTGCGCTCACAGGGACAGCGGGGGCCCCAAGCGGCCCAGCGTTCTCCCAGTGAGCGATATTTAGCTGCTCAGCGTCAGCCAAGGACCTGAGTTTTATCGGTAGAATCCGGTGGAACAAGAttttataccaaaaaaaaacgAGAGAGATTTTGTCCACCTTTTTAAGCGCTACTTTTTAAAGACCCGTCTGCTTTTCTACCTGAGGGATGTTTTGGCGGACCGGGGGCCACCGTCGCTGCTGCCAATTCTTGCCCGGGTGGAGACCTCCGTTGTACAACTGTGGCTGCTAATGGGTTTCAACTTTtttgtgcaattttttttttctttccattttattttcctccttttatttaaagtgaagctcttgtgttttgttacCAAACTTCACATTGAAGTTTCCTACCCTGTTGTTACAGAAAACCCAGTCAACCAAAAAGTGTCTTTCCGAGCGAAAGCCGCACTTGAGCTGACCACGAGTTTCCATGCAGTTCACCTTCTTTCTGTCTGAAGCGCCGGCGTCCCGGGCCAGAGGACCTTCTCCTCGGGGGGCGGTGGGACGCTCAGgcgtgtgcgtctgtgtggCGACCCGGGCGCCGGGCAGGGCGGCTCCGCGGCCTCGAGAGCCGTAGTGCCGTTGGTCCTCCTGGGGTTTATTCAACTGTAAACCCCAGAACGGCAACTCGACTGAATCCCAGAGACGGCCGTTAGTCCGGCGAAGAACTCCGAGCTCCGGCGGAACGTTAGCCGGTGGGCCGGCGCGTCTCTCCTGGCCGAGCCGCCCGGCGCCGCTGCCCCCGTCTGAGCGGGTCGCCGTCTGTTTTATATCGCTCTAAGAGAGGCTGCCTGTTTGCTGTCCCTCCATCAACAGATCTTCTCTTTTCGTCCaggacagttattttgtttttaatctttttccagtttgttttgtttgttttctaacatGTTGTCTGTTGTGTGTTCTCAGCACTGTAAGACAGTCCCTATACAATATGGAGAAGCAATATCACTGTATGAAACtcacacaatgtattattattattattgttattattattattattattattattattattattattattattattattcactagCACCCTAGGTGTGATAATTGAAGTAAATAtcttttatacaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191451 lncRNA upstream 187636 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 230651 1014078 ~ 1014380 (+) True G152040
TU191346 lncRNA upstream 554095 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 708339 535895 ~ 536692 (+) True G151968
TU191331 lncRNA upstream 884739 360093 ~ 360292 (+) True G151964
TU191630 lncRNA downstream 204195 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 207765 1461724 ~ 1461939 (+) True G152198
TU191670 lncRNA downstream 255543 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 675496 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 1001406 2255365 ~ 2323345 (+) True G152397
AMCG00005410 mRNA upstream 156 1214157 ~ 1244875 (+) True AMCG00005410
AMCG00005390 mRNA upstream 154350 1083158 ~ 1090681 (+) True AMCG00005390
AMCG00005464 mRNA upstream 163613 1073052 ~ 1081418 (+) True AMCG00005464
AMCG00005466 mRNA upstream 172790 1063490 ~ 1072241 (+) True AMCG00005466
AMCG00005465 mRNA upstream 209000 1030879 ~ 1036031 (+) True AMCG00005465
AMCG00005411 mRNA downstream 1083 1255042 ~ 1258125 (+) True AMCG00005411
AMCG00005415 mRNA downstream 30328 1284287 ~ 1295448 (+) True AMCG00005415
AMCG00005414 mRNA downstream 47078 1301037 ~ 1305072 (+) True AMCG00005414
AMCG00005412 mRNA downstream 67849 1321808 ~ 1322595 (+) True AMCG00005412
AMCG00005416 mRNA downstream 88801 1342760 ~ 1359523 (+) True AMCG00005416
TU191336 other upstream 707668 536751 ~ 537363 (+) True G151969
TU191334 other upstream 845166 398925 ~ 399865 (+) True G151967
TU191585 other downstream 113055 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 122509 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 492001 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 545852 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1249951 2503910 ~ 2510676 (+) True AMCG00005481

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU994435 True 389 lncRNA 0.36 1 NC_048574.1 27657076 ~ 27657464 (+)
eurasian perch (Perca fluviatilis) TU29018 True 5303 lncRNA 0.39 2 NC_053113.1 32986048 ~ 32991893 (-)
striped catfish (Pangasianodon hypophthalmus) TU29018 True 229 lncRNA 0.38 1 NC_047596.1 10143009 ~ 10143237 (+)
striped catfish (Pangasianodon hypophthalmus) TU372416 True 2596 lncRNA 0.38 3 NC_047615.1 4517601 ~ 4527820 (+)